Table 1.

Summary of calls on WGS data sets

Sample	cv	tlen			sup	calls	1 brk	2 brk
NA12877	55	322	0.707	0.834	13	1328	1327	346
NA12878	57	322	0.694	0.841	12	1379	1337	329
NA12882	54	322	0.702	0.835	13	1310	1310	367
NA18506	44	310	0.596	0.864	6	1727	1570	429
NA18507	45	311	0.602	0.864	7	1634	1492	419
NA18508	45	302	0.590	0.864	8	1794	1656	511
SRS228129	41	329	0.671	0.865	6	1461	1267	336

We show coverage and mean template length for all HTS data sets (The reads were always 100 bp paired.).

All calls were made by selecting a filter with simulated precision of at least 0.97 and maximizing recall. We display relative precision [percentage of calls in (8) or (48)], simulated recall , the number of read pairs required to support each call based on our parameter selection simulation (supp), the total number of filtered calls (calls), those with at least 1 breakpoint detected and those with both breakpoints detected.