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. 2013 Sep 25;8(9):e75978. doi: 10.1371/journal.pone.0075978

Table 2. P . pedatisecta miRNA targets identified by degradome sequencing.

miRNA family   miRNA Name mRNA annotation RAP_ID Alignment Score   Alignment Range   Cleavage Site   Category
miR156 osa-miR156l OsSPL14-SBP-box gene family member LOC_Os08g39890 2.5 991-1011 1002 I
bna-miR156a OsSPL14-SBP-box gene family member LOC_Os08g39890 1 991-1011 1002 I
vvi-miR156e OsSPL14-SBP-box gene family member LOC_Os08g39890 2 992-1011 1002 I
ppt-miR156a OsSPL14-SBP-box gene family member LOC_Os08g39890 1 992-1011 1002 I
sbi-miR156e OsSPL14-SBP-box gene family member LOC_Os08g39890 1 992-1011 1002 I
ptc-miR156k OsSPL14-SBP-box gene family member LOC_Os08g39890 0.5 992-1011 1002 III
vvi-miR156h OsSPL14-SBP-box gene family member LOC_Os08g39890 0.5 992-1011 1002 I
gma-miR156g OsSPL17-SBP-box gene family member LOC_Os09g31438 2 673-692 683 III
miR157 aly-miR157d OsSPL14-SBP-box gene family member LOC_Os08g39890 2 992-1011 1002 I
miR529 bdi-miR529 glucose-1-phosphate adenylyltransferase large subunit LOC_Os03g52460 3.5 45-66 56 II
bdi-miR529 OsSAUR30-Auxin-responsive LOC_Os07g29310 4 500-521 511 II
bdi-miR529 OsSAUR30-Auxin-responsive LOC_Os07g29310 4 504-525 515 I
bdi-miR529 Retrotransposon protein, putative, SINE subclass LOC_Os08g16830 4 169-190 180 III
aqc-miR529 glucose-1-phosphate adenylyltransferase large subunit LOC_Os03g52460 4 45-66 56 II
far-miR529 glucose-1-phosphate adenylyltransferase large subunit LOC_Os03g52460 4 45-66 56 II
osa-miR529b glucose-1-phosphate adenylyltransferase large subunit LOC_Os03g52460 4 45-66 56 II
osa-miR529b RNA recognition motif containing protein LOC_Os02g01700 4 690-711 701 I
miR319 zma-miR319a-5p retrotransposon protein LOC_Os01g57960 3.5 662-681 672 III