Table 4.
Linkage peaks exceeding LOD score of 2.
| Peak | ||||||
|---|---|---|---|---|---|---|
| Chromosome | Start | End | ||||
| LOD | Start SNP | End SNP | ||||
| Bands | Position1 | Position1 | ||||
| Score | ||||||
| ApoA2 | ||||||
| 2p11.2-2q14.2 | 2.46 | rs1015117 | 86,594,374 | rs280192 | 121,453,668 | |
| 4q28.3-4q31.21 | 2.09 | rs1992695 | 138,031,197 | rs336332 | 143,249,272 | |
| 4q35.1-4q35.2 | 2.23 | rs1158465 | 186,706,487 | rs1915852 | 191,026,530 | |
| 21q22.3 | 2.42 | rs4920106 | 42,748,803 | rs2256207 | 46,886,508 | |
| Fasting Insulin | ||||||
| 8q22.3-8q23.3 | 2.12 | rs718262 | 103,045,180 | rs1353277 | 116,148,616 | |
| HbA1C | ||||||
| 11p15.4-11p15.1 | 2.28 | rs1425151 | 10,644,793 | rs214101 | 17,245,930 | |
| HDL cholesterol | ||||||
| 1q31.3-1q32.1 | 2.12 | rs1538686 | 194,664,442 | rs4351714 | 201,027,281 | |
| 3p22.3-3p22.1 | 2.42 | rs4796 | 32,498,781 | rs1996562 | 40,110,750 | |
| 8p21.2-8p12 | 2.65 | rs310319 | 23,746,576 | rs8685 | 33,477,812 | |
| 10q23.1-10q23.2 | 2.72 | rs720262 | 82,462,543 | rs10887683 | 88,706,557 | |
| 13q12.13-13q12.3 | 2.06 | rs306395 | 25,348,564 | rs717651 | 30,070,594 | |
| 19p13.11-19q12 | 2.37 | rs7250192 | 18,584,325 | rs2194198 | 36,728,531 | |
| LDL cholesterol | ||||||
| 2q34-2q36.1 | 2.12 | rs1396828 | 210,753,727 | rs1463991 | 221,411,990 | |
| 11p13-11q13.1 | 3.02 | rs2045040 | 34,575,332 | rs633727 | 64,416,000 | |
| Total cholesterol | ||||||
| 2q35-2q36.1 | 2.27 | rs207928 | 216,744,686 | rs348971 | 222,626,435 | |
| 4q28.3-4q31.1 | 2.00 | rs13103412 | 136,871,469 | rs6840033 | 141,448,311 | |
| 11q12.2-11q13.2 | 2.00 | rs1530354 | 59,957,022 | rs1695 | 67,109,265 | |
| Triglycerides | ||||||
| 10q23.1-10q23.33 | 2.21 | rs489466 | 84,638,946 | rs2298037 | 96,736,068 | |
1
Position was determined using hg18 as the reference genome.