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. Author manuscript; available in PMC: 2013 Sep 30.
Published in final edited form as: Nature. 2012 Jun 28;486(7404):496–501. doi: 10.1038/nature11142

Figure 5. Nucleosome spacing and higher order chromatin structures.

Figure 5

a, Linker length distribution for all ~67,000 unique nucleosomes (black), for the top 50% nucleosomes with highest NCP score/noise ratio (red) and for ~45,000 MNase 2 unique nucleosomes (blue). b, AA/AT/TA/TT frequency in the genomic DNA flanking the nucleosomes. c, Fourier transform of AA/AT/TA/TT signals in the unique nucleosomes (red), in downstream flanking regions (black), and the mean (blue) and 95th percentile (green) of transform in the flanking regions after permuting the phase offset between the flanking region and the mapped nucleosome (Methods).