Table 1. Ranking of the most abundant coding transcripts in log and early stationary phase.
| name | length | Category | RPKM | |
|---|---|---|---|---|
| Log phase | ||||
| esxB | 303 | 3 | 50652.89 | |
| MMAR_5556 | 315 | X | 40854.49 | |
| esxA | 288 | 3 | 26542.65 | |
| esxP_2 | 297 | 3 | 20071.38 | |
| fdxA_2 | 345 | 7 | 18528.19 | |
| acpM | 348 | X | 15257.81 | |
| MMAR_4786 | 300 | 6 | 14794.73 | |
| esxP | 297 | 3 | 13370.97 | |
| whiB1 | 255 | 9 | 12950.39 | |
| MMAR_3655 | 318 | 8 | 10954.16 | |
| rpmC | 243 | 2 | 10034.55 | |
| MMAR_5447 | 297 | 6 | 9540.277 | |
| rpmJ | 114 | 2 | 8349.4 | |
| cspA_1 | 204 | 0 | 8046.823 | |
| esxN_1 | 285 | 3 | 7653.413 | |
| cspA | 204 | 0 | 7647.709 | |
| whiB4 | 351 | 9 | 6735.596 | |
| MMAR_1426 | 411 | X | 6444.57 | |
| MMAR_0966 | 210 | 10 | 6250.998 | |
| rpsG | 471 | 2 | 5777.113 | |
| MMAR_5437 | 288 | 9 | 5673.893 | |
| rpmG2 | 168 | X | 5395.081 | |
| MMAR_0724 | 333 | X | 5349.003 | |
| atpE | 246 | 7 | 5313.055 | |
| esxB_1 | 303 | 3 | 4960.48 | |
| MMAR_4277 | 333 | 3 | 4670.253 | |
| esxN_3 | 285 | 3 | 4649.54 | |
| MMAR_4306 | 156 | X | 4612.031 | |
| MMAR_1457 | 231 | X | 4462.532 | |
| MMAR_5440 | 312 | 10 | 4193.604 | |
| Early stationary phase | ||||
| MMAR_5556 | 315 | X | 431455.2 | |
| esxB | 303 | 3 | 54927.45 | |
| esxP_2 | 297 | 3 | 45801.19 | |
| MMAR_3655 | 318 | 8 | 38003.32 | |
| esxP | 297 | 3 | 23859.81 | |
| glnB | 339 | 9 | 15081.94 | |
| esxA | 288 | 3 | 13469.56 | |
| esxM | 297 | 3 | 12781.58 | |
| MMAR_4786 | 300 | 6 | 12211.53 | |
| whiB4 | 351 | 3 | 7220.467 | |
| MMAR_5447 | 297 | 9 | 6391.867 | |
| esxN_3 | 285 | 6 | 5895.651 | |
| cspA_1 | 204 | 3 | 5792.304 | |
| acpM | 348 | 0 | 5277.71 | |
| rpmJ | 114 | X | 4535.116 | |
| MMAR_3248 | 357 | 2 | 4488.187 | |
| esxN | 285 | 10 | 4032.88 | |
| MMAR_4277 | 333 | 3 | 3946.844 | |
| MMAR_4167 | 312 | 3 | 3796.862 | |
| MMAR_1893 | 381 | 10 | 3760.808 | |
| MMAR_2878 | 417 | 10 | 3726.62 | |
| MMAR_1457 | 231 | X | 3723.4 | |
| MMAR_2879 | 195 | X | 3673.473 | |
| whiB1 | 255 | X | 3644.408 | |
| esxB_1 | 303 | 9 | 3581.075 | |
| MMAR_2706 | 495 | 3 | 3222.692 | |
| MMAR_2905 | 261 | 10 | 3211.932 | |
| MMAR_4784 | 915 | X | 3154.366 | |
| MMAR_1868 | 975 | X | 3115.166 | |
| cyp278A1 | 1284 | X | 3046.001 | |
* 0 Virulence, detoxification, adaptation; 1 Lipid metabolism; 2 Information pathways; 3 Cell wall and cell processes; 5 Insertion seqs and phage; 6 PE/PPE; 7 Intermediary metabolism and respiration; 8 Unknown; 9 Regulatory proteins; 10 Conserved hypotheticals; X No homologue with H37Rv