Table 2. Specimen overview with sequencing type, number of reads, mean insert size, haploid and insert coverage.

Specimen	Sequencing Type	Number Reads	Mean Insert Size (SD)	Haploid Base Coverage	Insert Coverage
Tumor 49	Mate-pair	52958301	2554 (719)	0.9	22
PBMCs 49	Mate-pair	46573332	2331 (638)	0.8	18
Tumor 47	Mate-pair	37059440	2415 (744)	0.6	15
PBMC 47	Mate-pair	42991422	2381 (620)	0.7	16
Tumor 30	Mate-pair	28996426	2013 (748)	0.5	10
PBMC 30	Mate-pair	35798374	2349 (612)	0.6	14
Tumor 52	Mate-pair	28435620	2593 (735)	0.5	12
PBMC 52	Mate-pair	22915754	2279 (679)	0.4	9
Tumor 35	Mate-pair	29418741	2269 (780)	0.5	11
PBMC 35	Mate-pair	47255421	2487 (655)	0.8	19
Tumor 49	Paired-end	88240507	88 (55)	1.2	1.4
PBMC 49	Paired-end	64811016	90 (49)	0.9	1.0
cfDNA 49	Paired-end	30960138	145 (67)	0.4	0.8
Tumor 47	Paired-end	86628229	128 (66)	1.2	2.0
PBMC 47	Paired-end	98267227	136 (85)	1.3	3.2
cfDNA 47	Paired-end	14857474	129 (21)	0.2	0.5
PBMC40	Paired-end	98964511	144 (99)	1.3	3.2
PBMC52	Paired-end	65341166	89 (42)	0.9	2.1
PBMC27	Paired-end	86829099	133 (65)	1.2	2.8