Table 4. Number of predicted aberrations after SVDetect and additional filter steps in the five different tumor samples.

Animal ID	SVDetect	WindowFilter1	WindowFilter2
49	553	200 (36.2%)	35 (6.3%)
47	237	115 (48.5%)	5 (2.1%)
30	183	96 (52.5%)	34 (18.5%)
52	625	445 (71.2%)	7 (1.1%)
35	89	27 (30.3%)	1 (1.1%)

For the additional two filter steps the percentages of the aberrations initially predicted by SVDetect are given in brackets.