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. 2013 Sep 6;5(9):1754–1768. doi: 10.1093/gbe/evt133

Table 2.

Locus-Specific Information for 52 L1 Loci Retrieved from the Anolis Genome and Their Frequencies in Five Green Anole Populations

Locus Coordinates Length (bp) FL or TR % Divergence from Consensus North Carolina Suwannee Central Florida Everglades Gulf–Atlantic
L1AC20_684 chr4:68403974–68404330 357 TR 3.80 0.50 0.57 0.84 0.44 0.90
L1AC12s_4:12 chr4:126979289–126979702 414 TR 2.50 1.00 0.96 1.00 1.00 1.00
L1AC12s_GL3 chrUn_GL343596:105315–105733 419 TR 3.70 1.00 0.75 0.59 0.00 1.00
L1AC11s_6:33 chr6:33204599–33205038 440 TR 0.00 0.25 0.07 0.03 0.00 0.28
L1AC20_150 chr1:150575039–150575547 509 TR 7.30 1.00 0.97 1.00 0.94 0.88
L1AC16s_GL3 chrUn_GL343395:465703–466212 510 TR 4.30 1.00 1.00 1.00 1.00 1.00
L1AC16s_GL4 chrUn_GL343471:34099–34667 569 TR 1.80 1.00 1.00 1.00 1.00 1.00
L1AC16s_GL5 chrUn_GL344110:24189–24796 608 TR 1.50 1.00 1.00 1.00 1.00 1.00
L1AC20_257 chr1:257099845–257100469 625 TR 12.20 1.00 1.00 1.00 0.63 1.00
L1AC20_227 chr5:22764139–22764850 712 TR 11.00 1.00 1.00 1.00 1.00 1.00
L1AC18_223 chr1:223912127–223912841 715 TR 3.90 1.00 1.00 1.00 1.00 1.00
TE_3 chr1:214783982–214784696 715 TR 1.40 0.04 0.00 0.00 0.00 0.21
L1AC13s_4:27 chr4:27512892–27513664 773 TR 3.00 0.40 0.00 0.00 0.00 0.91
L1AC18_128 chr1:128475510–128476320 811 TR 3.60 1.00 1.00 1.00 1.00 1.00
L1AC18_543 chr5:54332386–54333253 868 TR 5.20 1.00 1.00 1.00 1.00 1.00
L1AC20_660 chr5:66011824–66012703 880 TR 4.70 0.38 0.27 0.33 0.13 0.71
L1AC17s_1:544 chr1:54502268–54503155 888 TR 2.70 0.82 0.67 0.71 1.00 1.00
L1AC17s_Gly chrUn_GL343200:1968310–1969771 916 TR 1.40 0.27 0.00 0.03 0.00 0.00
L1AC19_139 chr3:139851678–139852602 925 TR 1.90 1.00 1.00 1.00 1.00 1.00
L1AC19_2:144 chr2:144963722–144964741 1,020 TR 1.70 0.88 0.45 0.45 0.00 0.25
L1AC18_107 chr1:107831209–107832288 1,080 TR 1.20 1.00 1.00 1.00 1.00 1.00
L1AC2.26 chrUn_GL343239:906018–907246 1,229 TR 1.10 1.00 1.00 1.00 1.00 1.00
L1AC15s_1:87 chr1:87962249–87963655 1,407 TR 0.42 0.10 0.00 0.00 0.00 0.03
L1AC3.25 chr2:172762715–172767090 4,376 TR 0.45 1.00 0.94 1.00 1.00 0.97
L1AC3.24 scaffold_24:516031–520,687a 4,657 TR 0.53 1.00 0.71 1.00 0.83 0.81
L1AC3.21 chrUn_GL343497:464966–469686 4,721 TR 0.45 0.50 0.03 0.00 0.00 0.07
L1AC4.17 scaffold_125:1567058–1571933a 4,876 TR 0.54 1.00 1.00 1.00 0.93 1.00
L1AC4.18 scaffold_43:3503254–3508180a 4,927 TR 0.54 1.00 0.00 0.05 0.07 0.25
L1AC4.15 chr3:96424624–96429616 4,993 TR 0.50 n/a 0.70 0.77 1.00 0.96
L1AC3.18 chrUn_GL343280:1636141–1641248 5,108 TR 0.57 1.00 n/a n/a 1.00 1.00
L1AC4.8 chr5:19962314–19967530 5,217 FL 0.39 n/a 0.00 n/a 0.00 n/a
L1AC4.19 chrUn_GL343243:1081190–1086410 5,221 FL 0.52 1.00 0.50 0.41 1.00 0.93
L1AC4.22 chr2:90589288–90594512 5,225 FL 0.46 n/a n/a n/a 0.00 0.31
L1AC4.20 scaffold_527:549438–554665a 5,228 FL 0.85 0.90 0.13 0.69 0.13 0.88
L1AC4.11 chr3:178322659–178327899 5,241 FL 0.91 n/a 0.56 n/a 0.00 0.83
L1AC4.2 scaffold_85:3499711–3504951a 5,241 FL 0.35 0.31 0.03 0.00 0.00 0.54
L1AC4.25 chr3:170477780–170483021 5,242 FL 0.46 1.00 0.00 0.00 0.00 0.24
L1AC4.26 chr3:159015596–159020837 5,242 FL 0.50 0.80 0.17 0.18 0.40 0.65
L1AC20_3:170 chr3:170477780–170483022 5,243 FL 0.31 0.00 0.00 0.00 0.00 0.00
L1AC4.21 chr3:32972264–32977686 5,243 FL 0.66 0.63 0.00 0.00 0.25 0.68
L1AC4.4 scaffold_30:3968578–3973822a 5,245 FL 0.52 0.00 0.18 0.10 0.50 0.23
L1AC4.1 chr2:172917348–172922593 5,246 FL 0.35 0.00 0.00 0.03 0.00 0.00
L1AC8_1:108 chr1:108322088–108328343 5,334 FL 1.00 0.00 0.00 0.00 0.00 0.00
L1AC3.4 chr6:54998113–55004259 6,147 FL 0.47 0.00 0.13 0.03 0.00 0.38
L1AC3.10 chrUn_GL343295:80571–86721 6,151 FL 0.36 1.00 0.06 0.23 0.00 0.78
L1AC15_5:14 chr5:142569373–142575532 6,160 FL 0.10 0.80 0.22 0.56 0.00 0.69
L1AC3.8 Chr3:168587085–168593244 6,160 FL 0.31 1.00 0.18 0.10 0.00 0.61
L1AC15_2:15 chr2:153639275–153645435 6,161 FL 0.31 0.70 0.56 0.87 0.00 1.00
L1AC3.3 scaffold_57:1761641–1767805a 6,165 FL 0.39 0.27 0.28 0.03 0.20 0.23
L1AC11_2:10 chr2:107077315–107083913 6,599 FL 0.06 0.42 0.11 0.28 0.00 0.05
L1AC14_GL chrUn_GL343255:672694–679409 6,716 FL 0.70 0.92 0.00 0.23 n/a 0.85
L1AC10.2 chr3:172235202–172242019 6,818 FL 0.73 0.00 0.00 0.00 0.00 0.00

Note.—n/a, not applicable.

aAn insert collected from the February 2007 version that we were not able to map onto the May 2010 version.