Table 2. X-ray Data Collection and Refinement Statistics of p53-Y220C:Ligand Complexes.
compound | 3 | 4 | 9 | 11 | 12 | 13 |
---|---|---|---|---|---|---|
Data Collection | ||||||
Space Group | P212121 | P212121 | P212121 | P212121 | P212121 | P212121 |
a (Å) | 65.33 | 64.98 | 65.04 | 65.05 | 65.08 | 65.04 |
b (Å) | 71.04 | 71.17 | 71.26 | 71.13 | 71.17 | 71.24 |
c (Å) | 105.65 | 104.96 | 104.88 | 105.15 | 104.98 | 104.94 |
Molecules/AU | 2 | 2 | 2 | 2 | 2 | 2 |
Resolution (Å)a | 42.4–1.70 | 35.4–1.52 | 35.4–1.60 | 35.5–1.45 | 35.4–1.50 | 29.6–1.42 |
(1.79–1.70) | (1.60–1.52) | (1.69–1.60) | (1.53–1.45) | (1.58–1.50) | (1.50–1.42) | |
Unique reflections | 54,754 | 73,697 | 64,327 | 84,513 | 79,145 | 91,185 |
Completeness (%)a | 99.8 (99.6) | 97.8 (94.2) | 99.0 (97.0) | 97.3 (93.2) | 99.9 (99.9) | 98.7 (94.7) |
Multiplicitya | 5.4 (5.4) | 5.7 (5.5) | 5.4 (5.3) | 5.5 (5.7) | 5.7 (5.5) | 5.2 (4.7) |
Rmerge(%)a,b | 10.0 (31.1) | 7.7 (39.4) | 7.8 (31.4) | 7.2 (31.4) | 6.7 (22.9) | 5.0 (38.1) |
<I/σI>a | 9.9 (4.3) | 13.8 (4.1) | 12.9 (4.4) | 14.4 (5.0) | 16.3 (6.7) | 17.0 (3.8) |
Wilson B value (Å2) | 13.6 | 12.8 | 13.4 | 10.8 | 11.5 | 14.5 |
Refinement | ||||||
No. of protein atomsc | 3124 | 3150 | 3160 | 3126 | 3137 | 3127 |
No. of water atoms | 638 | 607 | 609 | 557 | 577 | 558 |
No. of zinc atoms | 2 | 2 | 2 | 2 | 2 | 2 |
No. of ligand atoms | 26 | 42 | 48 | 62 | 60 | 60 |
Overall B value (Å2) | 17.9 | 16.2 | 16.8 | 13.6 | 14.2 | 16.8 |
Rcryst, (%)d | 16.3 | 17.3 | 17.6 | 19.4 | 16.8 | 18.0 |
Rfree, (%)d | 19.3 | 19.7 | 19.3 | 21.6 | 18.7 | 19.5 |
rmsd bonds (Å) | 0.007 | 0.006 | 0.005 | 0.006 | 0.006 | 0.006 |
rmsd angles (°) | 1.0 | 1.1 | 1.0 | 1.1 | 1.1 | 1.1 |
PDB code | 4AGL | 4AGM | 4AGN | 4AGO | 4AGP | 4AGQ |
Values in parentheses are for the highest-resolution shell.
Rmerge = ∑(Ih,i – <Ih>)/∑Ih,i.
Number includes alternative conformations.
Rcryst and Rfree = ∑||Fobs| – |Fcalc||/∑|Fobs| where Rfree was calculated over 5% of the amplitudes chosen at random and not used in the refinement.