Table 3.
Potential chimeric ORFs identified from the no-coverage and rearrangement regions between the ICPA 2039 and ICPB 2039 lines
| ORF start | ORF stop | ORF length | Nearest gene | Subject start | Subject stop | Chimera length | Identity | Subject features | No of transmembrane helices |
|---|---|---|---|---|---|---|---|---|---|
| 260 331 | 260 702 | 371 | cox3 | 260 342 | 260 702 | 361 | 98 | ORF | 1 |
| 164 867 | 165 424 | 557 | nad7 | 165 424 | 165 353 | 72 | 100 | ORF | 1 |
| 420 342 | 420 902 | 560 | — | 233 322 | 232 862 | 461 | 96 | atp1 | 0 |
| 534 744 | 535 115 | 371 | — | 352 424 | 352 403 | 361 | 98 | nad4 | 1 |
| 264 435 | 265 745 | 1310 | — | 60 093 | 59 813 | 281 | 100 | rps4 | 2 |
| 165 464 | 165 853 | 389 | nad7 | 265 742 | 265 981 | 241 | 97 | ORF | 3 |
| 164 867 | 165 424 | 557 | nad7 | 165 424 | 165 353 | 72 | 100 | ORF | 1 |
| 276 037 | 276 405 | 368 | — | 468 809 | 468 752 | 58 | 98 | atp9 | 3 |
| 396 025 | 396 876 | 851 | mttB | 264 909 | 265 396 | 488 | 97 | ORF | 2 |
| 396 285 | 396 641 | 356 | mttB | 265 144 | 265 396 | 253 | 99 | ORF | 1 |
| 264 069 | 264 434 | 365 | — | 44 935 | 45 092 | 158 | 100 | nad5 | 1 |
| 165 633 | 166 088 | 455 | nad7 | 265 981 | 265 886 | 96 | 100 | ORF | 0 |
| 8534 | 8842 | 308 | ccmFc | 476 033 | 476 052 | 20 | 100 | — | 1 |