Table 2.
Numbers and density of SSR loci identified in 17 maize genomes
| Genotypes | SSR numbers |
SSR interval (kb) |
||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MNR | DNR | TNR | TTR | PNR | HNR | Total | MNR | DNR | TNR | TTR | PNR | HNR | Total | |
| 178 | 78 367 | 34 604 | 13 929 | 2 964 | 4172 | 2226 | 136 262 | 26.80 | 60.69 | 150.76 | 708.50 | 503.36 | 943.40 | 15.41 |
| 81565 | 79 042 | 34 457 | 13 893 | 2929 | 4178 | 2224 | 136 723 | 26.57 | 60.95 | 151.16 | 716.97 | 502.63 | 944.24 | 15.36 |
| 18White | 77 144 | 34 451 | 13 931 | 2928 | 4166 | 2217 | 134 837 | 27.22 | 60.96 | 150.74 | 717.21 | 504.08 | 947.23 | 15.57 |
| 18Red | 77 049 | 34 495 | 13 919 | 2933 | 4188 | 2221 | 134 805 | 27.26 | 60.88 | 150.87 | 715.99 | 501.43 | 945.52 | 15.58 |
| 48-2 | 76 920 | 34 448 | 13 884 | 2924 | 4123 | 2219 | 134 518 | 27.30 | 60.96 | 151.25 | 718.19 | 509.34 | 946.37 | 15.61 |
| B73 | 77 888 | 34 755 | 14 028 | 2948 | 4181 | 2239 | 136 039 | 26.96 | 60.42 | 149.70 | 712.35 | 502.27 | 937.92 | 15.44 |
| CML411 | 78 591 | 34 546 | 13 900 | 2935 | 4189 | 2225 | 136 386 | 26.72 | 60.79 | 151.08 | 715.50 | 501.31 | 943.82 | 15.40 |
| Dan598 | 78 558 | 34 559 | 13 954 | 2904 | 4159 | 2227 | 136 361 | 26.73 | 60.77 | 150.49 | 723.14 | 504.93 | 942.97 | 15.40 |
| ES40 | 78 978 | 34 372 | 13 894 | 2924 | 4161 | 2221 | 136 550 | 26.59 | 61.10 | 151.14 | 718.19 | 504.69 | 945.52 | 15.38 |
| Han21 | 78 539 | 34 584 | 13 951 | 2898 | 4157 | 2233 | 136 362 | 26.74 | 60.72 | 150.53 | 724.64 | 505.17 | 940.44 | 15.40 |
| Huangzao4 | 76 773 | 34 445 | 13 878 | 2907 | 4165 | 2224 | 134 392 | 27.35 | 60.97 | 151.32 | 722.39 | 504.20 | 944.24 | 15.63 |
| Mo17 | 78 360 | 34 442 | 13 910 | 2902 | 4108 | 2220 | 135 942 | 26.80 | 60.97 | 150.97 | 723.64 | 511.20 | 945.95 | 15.45 |
| P1 | 78 975 | 34 447 | 13 849 | 2961 | 4146 | 2235 | 136 613 | 26.59 | 60.96 | 151.64 | 709.22 | 506.51 | 939.60 | 15.37 |
| RP125 | 76 880 | 34 523 | 13 934 | 2929 | 4198 | 2244 | 134 708 | 27.32 | 60.83 | 150.71 | 716.97 | 500.24 | 935.83 | 15.59 |
| Z. mexicana | 75 997 | 34 339 | 13 806 | 2886 | 4085 | 2233 | 133 346 | 27.63 | 61.15 | 152.11 | 727.65 | 514.08 | 940.44 | 15.75 |
| Ye478 | 78 571 | 34 508 | 13 973 | 2944 | 4159 | 2234 | 136 389 | 26.73 | 60.86 | 150.29 | 713.32 | 504.93 | 940.02 | 15.40 |
| Zheng22 | 78 921 | 34 455 | 13 870 | 2920 | 4156 | 2230 | 136 552 | 26.61 | 60.95 | 151.41 | 719.18 | 505.29 | 941.70 | 15.38 |
| Average | 77 974 | 34 496 | 13 912 | 2926 | 4158 | 2228 | 135 693 | 26.93 | 60.88 | 150.95 | 717.70 | 505.05 | 942.55 | 15.48 |
| Total | 153 231 | 65 236 | 25 910 | 6572 | 8839 | 4870 | 264 658 | 13.70 | 32.19 | 81.05 | 319.54 | 237.58 | 431.21 | 7.93 |
| Common | 22 453 | 9963 | 4603 | 553 | 929 | 470 | 38 971 | 93.53 | 210.78 | 456.22 | 3797.47 | 2260.50 | 4468.09 | 53.89 |
MNR, DNR, TNR, TTR, PNR, and HNR indicate mono-, di-, tri-, tetra-, penta-, and hexa-nucleotide SSRs.