Table 1. Lists of proteins analyzed by pathway analysis.

mRNA processing
RALY		RNA-binding protein Raly
NCBP1		Nuclear cap-binding protein subunit 1
RNMT		mRNA cap guanine-N7 methyltransferase
GAR1		H/ACA ribonucleoprotein complex subunit 1
PABPC4		PABPC4 protein
MLH1		DNA mismatch repair protein Mlh1
YBX1		Nuclease-sensitive element-binding protein 1
SRRT		Serrate RNA effector molecule homolog
DDX17		Probable ATP-dependent RNA helicase DDX17
RRP1B		Ribosomal RNA processing protein 1 homolog B
PCBP1		Poly(rC)-binding protein 1
PCBP2		Poly(rC)-binding protein 2
SFRS9		Splicing factor, arginine/serine-rich 9
PABPC1		Polyadenylate-binding protein 1
NSUN2		tRNA (cytosine-5-)-methyltransferase NSUN2
KRR1		KRR1 small subunit processome component homolog
DHX9		ATP-dependent RNA helicase A
RRP1		Ribosomal RNA processing protein 1 homolog B
DDX1		ATP-dependent RNA helicase DDX1
HNRNPU		Heterogeneous nuclear ribonucleoprotein U
TTF2		Transcription termination factor 2
SFRS3		Splicing factor, arginine/serine-rich 3
PHAX		Phosphorylated adapter RNA export protein
NOP2		Putative ribosomal RNA methyltransferase NOP2
RPS16		RPS16 protein
SNRNP200		U5 small nuclear ribonucleoprotein 200 kDa helicase
SYF2		Pre-mRNA-splicing factor SYF2
NOP56		NOP56 protein
RBM14		RNA-binding protein 14
BAT1		Spliceosome RNA helicase BAT1
ADAR		Double-stranded RNA-specific adenosine deaminase
KIAA1429		Protein virilizer homolog
Ribonucleoprotein complex biogenesis
NCBP1			Nuclear cap-binding protein subunit 1
KRR1			KRR1 small subunit processome component homolog
RRP1			Ribosomal RNA processing protein 1 homolog B
GAR1			H/ACA ribonucleoprotein complex subunit 1
NIP7			60 S ribosome subunit biogenesis protein NIP7 homolog
DDX1			ATP-dependent RNA helicase DDX1
PHAX			Phosphorylated adapter RNA export protein
NOP2			Putative ribosomal RNA methyltransferase NOP2
RPS16			RPS16 protein
RRP1B			Ribosomal RNA processing protein 1 homolog B
SNRNP200			U5 small nuclear ribonucleoprotein 200 kDa helicase
SFRS9			Splicing factor, arginine/serine-rich 9
NOP56			NOP56 protein
Chromatin modification
ING5			Inhibitor of growth protein 5
RBBP4			Histone-binding protein RBBP4
RBBP7			Histone-binding protein RBBP7
ARID2			AT-rich interactive domain-containing protein 2
CHD8			Chromodomain-helicase-DNA-binding protein 8
HDAC2			Histone deacetylase 2
HDAC1			Histone deacetylase 1
ASH1L			Probable histone-lysine N-methyltransferase ASH1L
BRDT			Bromodomain testis-specific protein
RBM14			RNA-binding protein 14
BCOR			BCL-6 corepressor
CHD4			Chromodomain-helicase-DNA-binding protein 4
MLL2			Histone-lysine N-methyltransferase MLL2
Nucleocytoplasmic transport
PHAX			Phosphorylated adapter RNA export protein
NCBP1			Nuclear cap-binding protein subunit 1
UPF1			Regulator of nonsense transcripts 1
SET			Protein SET
GLE1			Nucleoporin GLE1
NUPL2			Nucleoporin-like protein 2
TPR			Nucleoprotein
KPNA2			Importin subunit alpha-2
KPNB1			Importin subunit beta-1
BAT1			Spliceosome RNA helicase BAT1
Transcription
ING5	Inhibitor of growth protein 5
NMI	N-myc-interactor
FOXK1	Forkhead box protein K1
FOXM1	Forkhead box protein M1
CCNT1	Cyclin-T1
ARID2	AT-rich interactive domain-containing protein 2
YBX1	Nuclease-sensitive element-binding protein 1
CNOT4	CCR4-NOT transcription complex subunit 4
YBX2	Y-box-binding protein 2
CHD8	Chromodomain-helicase-DNA-binding protein 8
ASH2L	Set1/Ash2 histone methyltransferase complex subunit ASH2
BCOR	BCL-6 corepressor
EWSR1	RNA-binding protein EWS
CHD4	Chromodomain-helicase-DNA-binding protein 4
MLL2	Histone-lysine N-methyltransferase MLL2
ASXL3	Putative Polycomb group protein ASXL3
TAF4	Transcription initiation factor TFIID subunit 4
RBBP4	Histone-binding protein RBBP4
TAF6	Transcription initiation factor TFIID subunit 6
POLR1A	DNA-directed RNA polymerase I subunit RPA1
MED12	Mediator of RNA polymerase II transcription subunit 12
CSDA	DNA-binding protein A