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. 2013 Oct 3;8(10):e75682. doi: 10.1371/journal.pone.0075682

Table 6. Pathway analysis for differentially expressed genes (uncorrected) T-iPSC neurons vs F-iPSC neurons.

Category Functions Annotation p-Value Molecules (increased in T-IPSC neurons)
Neurological Disease Schizophrenia 3.24E-04 ATP1A2, CELF2, CHL1, CLDN5, CNTNAP2, DAB1, FOXP2, GRM3, NELL2, NTF3, SCD5, TAC1, TTR
Neurological Disease malformation of brain 3.94E-04 ARX, CNTNAP2, EOMES, MEF2C, VLDLR
Neurological Disease type 1 lissencephaly 9.70E-04 ARX, VLDLR
Neurological Disease seizure disorder 2.04E-03 ARX, ATP1A2, CNTNAP2, GPR98, KCNQ3, MEF2C, PRICKLE1, TAC1
Neurological Disease speech and language disorders 3.45E-03 ARX, FOXP1, FOXP2
Neurological Disease epilepsy 4.12E-03 ARX, ATP1A2, CNTNAP2, KCNQ3, MEF2C, PRICKLE1, TAC1
Category Functions Annotation p-Value Molecules (decreased in T-iPSC neurons)
Cellular Development differentiation of tumor cell lines 1.29E-06 ASCL1, BTG2, CCND1, DLK1, HOXA5, JAG1, KLF4, NOTCH1, NTRK2, PRKCD, PRKD3, WNT7A, ZBTB16
Cellular Growth andProliferation proliferation of epithelial cells 1.14E-05 CCND1, ITGB8, NOTCH1, PAX2, PRKCD, PTPRZ1, RGS4, VIP, WNT7A
Cellular Development differentiation of cells 1.40E-05 ASCL1, BTG2, CCND1, DLK1, DLL1, FRZB, HOXA5, HOXA7, HOXA9, HS6ST1, JAG1, KLF4, MAL, NOTCH1, NTRK2, PRKCD, PRKD3, PTCH1, RGS4, TESC, WNT7A, ZBTB16
Psychological Disorders Anxiety Disorders 1.84E-05 ADRA1A, CA14, CACNA2D3, GABRR1, GAD2, OPRM1, SLC32A1, SLC6A1
Neurological Disease seizures 2.44E-05 ANKRD6, CA14, CACNA2D3, CYYR1, GABRR1, GAD1, GAD2, KLF10, LAMP5, PCSK1, SLC32A1, SLC6A1