Table 1. Allelic types and Hunter and Gaston Diversity index (HGDI) of B. melitensis and B. abortus isolates for 16 loci in this study.
Locus |
B. melitensis
|
B. abortus
|
|||||||
---|---|---|---|---|---|---|---|---|---|
ATsa | TRsb | HGDIc | CId | ATsa | TRsb | HGDIc | CId | ||
Panel 1 | Bruce 06 | 2 | 1,3 | 0.048 | 0.000-0.113 | 1 | 4 | 0 | 0 |
Bruce 08 | 2 | 4-5 | 0.094 | 0.008-0.180 | 1 | 5 | 0 | 0 | |
Bruce11 | 2 | 2-3 | 0.048 | 0.000-0.113 | 3 | 2-4 | 0.185 | 0.067-0.303 | |
Bruce 12 | 1 | 13 | 0 | 0 | 1 | 12 | 0 | 0 | |
Bruce 42 | 2 | 2,4 | 0.048 | 0.000-0.113 | 1 | 2 | 0 | 0 | |
Bruce 43 | 3 | 1-3 | 0.014 | 0.004-0.224 | 1 | 2 | 0 | 0 | |
Bruce 45 | 1 | 3 | 0 | 0 | 1 | 3 | 0 | 0 | |
Bruce 55 | 2 | 2-3 | 0.048 | 0.000-0.113 | 3 | 1-3 | 0.395 | 0.271-0.519 | |
Panel 2A | Bruce 18 | 2 | 4,6 | 0.007 | 0.000-0.148 | 3 | 6-8 | 0.136 | 0.028-0.245 |
Bruce 19 | 4 | 20-23 | 0.223 | 0.106-0.348 | 2 | 17,21 | 0.029 | 0.027-0.084 | |
Bruce 21 | 1 | 8 | 0 | 0 | 2 | 8-9 | 0.029 | 0.027-0.084 | |
Panel 2B | Bruce 04 | 6 | 3-8 | 0.732 | 0.690-0.779 | 3 | 4-6 | 0.528 | 0.423-0.633 |
Bruce 07 | 4 | 4-8 | 0.118 | 0.022-0.215 | 4 | 4-7 | 0.562 | 0.448-0.676 | |
Bruce 09 | 6 | 1,3-4,6-8 | 0.186 | 0.007-0.301 | 10 | 3-12 | 0.842 | 0.809-0.875 | |
Bruce 16 | 9 | 2-10 | 0.826 | 0.786-0.866 | 2 | 3-4 | 0.183 | 0.068-0.297 | |
Bruce 30 | 7 | 3-8,10 | 0.749 | 0.678-0.820 | 2 | 3,5 | 0.205 | 0.008-0.323 |
Allelic types
The total number of repeat units at each locus was determined by the correlation with the amplicon size according to previously published reports (Materials and Methods)
Hunter and Gaston index
Precision of the diversity index, expressed as 95% upper and lower boundaries