Skip to main content
. 2013 Oct 4;8(10):e75746. doi: 10.1371/journal.pone.0075746

Figure 3. Phylogenetic tree showing the relatedness of AmnB and other class III ring-cleavage dioxygenases.

Figure 3

The dendrogram was constructed by the neighbor-joining method using MEGA 5.02 based on sequence alignments calculated by Clustal W. Sequence of deduced protein from amnB gene from B. xenovorans strain LB400 is highlighted (black circle). The proteins (accession number) are: AmnB B. xenovorans LB400 (YP559855.1); AmnB P. knackmussii B13 (CAE92875.1); AmnB (LigB) Achromobacter xylosoxidans A8 (YP003978676.1); AmnB Bordetella avium 197N (YP785083.1); AmnB P. pseudoalcaligenes JS45 (AAB71524.1); NbzCb P. putida HS12 plasmid pNB1 (AAK26519.1); AmnB P. putida W619 (YP001748883.1); AmnB Pseudomonas sp. AP-3 (O33477.1); CnbCb C. testosteroni CNB-1 plasmid pCNB1 (YP001967698.1); CnbCb Cupriavidus sp. D4 (AEI74584.1); CnbCb Verrucosispora maris AB-18-032 (YP004405267.1); CnbCb P. putida plasmid pZWL73 (DQ306889.1); HpaD B. xenovorans LB400 (YP553304.1); HpcB P. aeruginosa UCBPP-PA14 (ABJ13394.1); CarBb Neptuniibacter sp. CAR-SF (BAG30828.1); CarBb Janthinobacterium sp. J3 (BAC56744.1); CarBb P. stutzeri OM1 (BAA31269.1); CarBb P. resinovorans plasmid pCAR1 (BAC41547.1); NahH Acinetobacter sp. PC19 (AAW81679.1); NahH P. putida plasmid NAH7 (AAA98183.1); XylE Achromobacter sp. BP3 (ACF20629.1); NahH P. stutzeri CLN100 (CAD62376.1); NahH P. aeruginosa CGMCC 1.860 (ACV05014.1); NahH P. fluorescens plasmid pNAH20 (AAW81680.2); TfdC Sphingobium japonicum UT26S (YP_003544400.1); TfdC Burkholderia sp. R172 (Q7WYF8); ClcA Ralstonia sp. JS705 (CAA06968.1); ClcA Alcaligenes sp. NyZ215 (ABQ23434.1); ClcA Pandoraea pnomenusa MCB032 (ABS81346.1); ClcA B. xenovorans LB400 (ABE31816.1); ClcA E. coli plasmid pAC27 (AAA98281.1); ClcA P. aeruginosa JB2 (AAC69474.1); ClcA P. putida RR21 (CAE92861); ClcA Bordetella petrii DSM12804 (CAP41873.1); CatA Arthrobacter arilaitensis Re117 (YP_003918477.1); CatA P. putida W619 (ACA73195.1); CatA P. entomophila L48 (CAK15903.1); CatA Agrobacterium sp. H13-3 (YP_004279743.1); PhsA Streptomyces hygroscopicus subsp. jinggangensis 5008 (YP006248289.1); PhsA Streptomyces antibioticus IMRU3720 (AAA86668.1); GriF Streptomyces griseus subsp. griseus NBRC13350 (BAG21075.1); NspF Streptomyces murayamaensis (BAJ08174.1).