Table 3.

TCGA tumors positive for partial HER-2 region amplification but with low HER-2 mRNA expression

Tumor ID	GISICC2 values highest over Amplicon-140 kb	RNAseqV1 HER-2 values	HER-2 IHC
TCGA-D8-A1JG	0.58	1.09	2 +
TCGA-AN-A041	0.64	0.88	2 +
TCGA-A8-A070	0.72	- 5.50	1 +
TCGA-A8-A0AD	0.74	- 0.65	1 +
TCGA-D8-2A7G	0.78	-	2 +
TCGA-A2-A0YE	1.12	- 4.00	0 +
TCGA-C8-A26X	1.14	- 2.74	1 +
TCGA-A7-A13D	1.68	- 2.57	2 +
TCGA-A8-A06U	1.81	- 1.70	2 +
TCGA-BH-A1EN	6.00	- 3.90	-