Figure 1.

Phasing Accuracy on the High-Coverage Trio Parents’ Genotypes Phased Together with the 1000GP Genotypes

The x axes show the amount of sequencing reads on the trio parents that was used by SHAPEIT2. The y axes show the accuracy measured on the trio parents by MSD on the left and SER on the right. Results of Beagle are shown with black dots. SHAPEIT2 was run with (orange line) and without (green line) use of the $\sim 4x$ sequencing reads on the 1000GP samples.