Figure 2.

Results of Simulations by using Paired-End Reads with Varying Insert Size Distribution

The x axis shows the sequence coverage and the y axis shows the mean switch distance. Beagle and SHAPEIT2 were run without any phase informative reads, and these results are plotted as gray and black points, respectively. The results are shown for different mean insert sizes: 300 bp insert (green), 500 bp insert (orange), 1,000 bp insert (blue), a mixture of 300/500/1,000 bp inserts (pink), 90% 500 bp and 10% 6 kb (yellow), 50% 500 bp and 50% 6 kb (light green), and distribution of insert sizes matched to the distribution of distances between heterozygote SNPs (light brown).