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. 2002 May 1;70(6):1555–1563. doi: 10.1086/340847

Table 1.

Primer Pairs and Annealing Temperatures Used to Amplify the PTPN11 Coding Sequence and Sizes of PCR Products

Primer Sequence(5′→3′)
Exon Forward Reverse Annealing Temperature(°C) Product Length(bp)
1 GCTGACGGGAAGCAGGAAGTGG CTGGCACCCGTGGTTCCCTC 60 589
2 ACTGAATCCCAGGTCTCTACCAAG CAGCAAGCTATCCAAGCATGGT 60 405
3 CGACGTGGAAGATGAGATCTGA CAGTCACAAGCCTTTGGAGTCAG 60 384
4 AGGAGAGCTGACTGTATACAGTAG CATCTGTAGGTGATAGAGCAAGA 58 447
5 CTGCAGTGAACATGAGAGTGCTTG GTTGAAGCTGCAATGGGTACATG 60 329
6 TGCATTAACACCGTTTTCTGT GTCAGTTTCAAGTCTCTCAGGTC 54 282
7 GAACATTTCCTAGGATGAATTCC GGTACAGAGGTGCTAGGAATCA 56 271
8 GACATCAGGCAGTGTTCACGTTAC CCTTAAAGTTACTTTCAGGACATG 57 350
9 GTAAGCTTTGCTTTTCACAGTG CTAAACATGGCCAATCTGACATGTC 56 357
10 GCAAGACTTGAACATTTGTTTGTTGC GACCCTGAATTCCTACACACCATC 60 284
11 CAAAAGGAGACGAGTTCTGGGAAC GCAGTTGCTCTATGCCTCAAACAG 60 453
12 GCTCCAAAGAGTAGACATTGTTTC GACTGTTTTCGTGAGCACTTTC 56 250
13 CAACACTGTAGCCATTGCAACA CGTATCCAAGAGGCCTAGCAAG 60 356
14a ACCATTGTCCCTCACATGTGC CAGTGAAAGGCATGTGCTACAAAC 60 259
15 CAGGTCCTAGGCACAGGAACTG ACATTCCCAAATTGCTTGCCT 60 321
a

GC clamps were added at the 5′ end for DHPLC analysis: forward primer, 5′-CCCGCCGCCCCCGCCG-3′; reverse primer, 5′-CCGCGCCCCCGCCCG-3′ (product length = 290 bp).