Table 1. Description of linkage groups of the Grand Rapids × Iceberg linkage map.
Linkage group | Number of AFLP markers | Number of SNP markers | Total number of markers | Length of linkage group in cM | Average interval between two subsequent markers in cM | Number of anchor markersc | Length of linkage group in reference map in cMd | Percentage covering of reference mape | Number of markers with distorted segregation |
---|---|---|---|---|---|---|---|---|---|
LG 1 | 31 | 3 | 34 | 71 | 2.1 | 2 | 144 | 49 | 0 |
LG 2a | 17 | 29 | 46 | 168 | 3.7 | 16 | 152 | 111 | 2 |
LG 3 | 21 | 2 | 23 | 78 | 3.6 | 2 | 174 | 45 | 0 |
LG 4a | 26 | 22 | 48 | 143 | 3.1 | 12 | 234 | 61 | 7 |
LG 5a | 17 | 15 | 32 | 90 | 2.9 | 8 | 234 | 38 | 2 |
LG 6a | 2 | 15 | 17 | 58 | 3.6 | 10 | 243 | 40 | 2 |
LG 7 | 20 | 17 | 38b | 133 | 3.6 | 11 | 142 | 94 | 2 |
LG 8a | 20 | 19 | 39 | 178 | 4.7 | 12 | 204 | 87 | 1 |
LG 9 | 22 | 9 | 31 | 98 | 3.3 | 7 | 159 | 62 | 10 |
Total | 176 | 131 | 308b | 1,017 | 3.3 | 80 | 1,586 | 64 | 26 |
aCombined data for two sections of this linkage group.
bData include a single phenotypic marker for white seed color (w gene).
cSNP markers with known position on both Grand Rapids × Iceberg linkage map and reference map.
dReference map was based on segregation of markers in the interspecific (L. sativa × L. serriola) mapping population31.
eLength of Grand Rapids × Iceberg linkage map expressed as a percentage of length of reference linkage map.