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. 2002 Jun 17;71(2):312–326. doi: 10.1086/341718

Table A1.

L1Hs Ta PCR Primers, Chromosomal Locations, and PCR Product Sizes[Note]

Primer Sequence(5′→3′)
 PCR Product Sizesd(bp)
Element GenBankAccessionNumber ChromosomalLocationa 5′ 3′ AnnealingTemperatureb HumanDiversityc Filled Empty SubfamilySpecific
L1HS1 AC010739 2 AGGGAATGCTTATATTGTTGATGAG ACTTCCTTCAGGGTTAATAGCAAAG 60 FP 3,877 159 224e
L1HS2 AC010305 16 ACCAAATATCTGGACACTTTCTGG GAAGTCAGCAGTGGTTAATTTTACA 60 IF 6,131 74 171
L1HS3 AC008572 5 GCTTCTAGAATTGGAAGTAATATGG AGTAGCCTTGAATCATCTTTTG 56 FP 656 95 422e
L1HS4 AC009494 Y Inserted in repeats Inserted in repeats … R 467 … …
L1HS5 AC020647 12 TCAACTACAAAGTTGAAGAATAGG GTTTCCATCAACAAGATCATGTCAAG 58 LF 546 376 455e
L1HS6 AC016138 3 TTTATTTCCCTGCATCTGATTA CCTGTTATTAGATAATGAGTTCTAGTC 54 HF 402 122 219e
L1HS7 AC004773 7q11 CCTTAGACATATTCTTGGAAATAG CCAGAATATTTGGGTATTTCATCTG 58 HF 326 169 256e
L1HS8f AC004491 7q Inserted in repeats Inserted in repeats … R 1,689 … …
L1HS9f AC004694 7p TCTTTCAATGGAAACAAGAGGTATC AGGGAGAGGGACACTGAGTTTAT 59 FP 6,126 74 178
L1HS10g AF149774 7p Inserted in repeats Inserted in repeats … R 6,076 … …
L1HS11 AL049842 6q Inserted in repeats Inserted in repeats … R 667 … …
L1HS12g AC007538 Xq28 GTTAAAGCAATCAAGCAATCTACTG TAACAAGGCCACTGTAGAAAAGATT 59 FP 6,188 104 209
L1HS13f AC007938 7q31 ATGGGAAGGAACCCCATCTAT AATTACTCCTCTCTTTGGCCTGTT 59 HF 745 128 220e
L1HS14 L05367 17q AAGTGGATTAACAGTAACATACAGA CCAAGCTGATAACTGATTATCTCA 55 IF 601 251 158
L1HS15f AC007556 2 AATGCATACCCATGAGGACAA ATGGTGTTGCACAACAAAAGAA 60 HF 6,167 126 197
L1HS16 AP000220 21q CCCTCACAGAGTGCTTGGTAA GGGAAGGTAGGAAAACAGATT 56 IF 368 101 207e
L1HS17f AC007486 X GCATCCCTAAAGCAATAATCCA GGAATTTTCCACTTGTGGTGTC 60 Paralog 4,286 90 170e
L1HS18 AC005798 4 TTGAACAGCTTAGACTCGTCAGATA GCAGTTAGACAGGAAAACAGAAAGA 60 HF 6,174 87 212
L1HS19 AC007876 Y Inserted in repeats Inserted in repeats … R 6,115 … …
L1HS20 AC009241 2 AATGGAAGAGCTCTCAAATTCCTTA GCAACCATTCAAAAATTTACAACAG 61 IF 2,302 62 181
L1HS21 AC008277 2 GTGTTGGCATATTTCTATTCG TAAAGGCTGAACTTTGCATTG 57 LF 2,606 84 178e
L1HS22 AC010682 Y GCTCTCGGGTTCTTCTACCTCT TCTACTGTTCCATGCAATAGATGTG 60 NR 3,216 266 249e
L1HS24f,g AC004554 Xp22 GTGTATTTTGCCTTTTGAACCAA CAAAAACTTGTTTCACTTGATTTTTAG 59 IF 6,148 101 181e
L1HS25f,g AC002385 7q31 GAGGACCTTATTCATTTATTGC CCATCTGAGCTTTAGTTTTGTCATA 60 FP 6,140 94 191e
L1HS26f AC003689 11q12 GCTTCAAGCTTAAAAGATGTAGACT CCTACCCAAGTATCCACTGTCC 60 IF 2,652 589 420e
L1HS27 AC007736 2 AGAACGTTGCCACATTATTTTGA GTAGGAAGGTCTGGACTGGAGTATT 58 FP 3,667 68 214e
L1HS28g,h AC002980 Xp22 CTTTTGTGACACTGGATTTCTAGC CACTGTATATTGGAGCTGTTTTTCC 58 IF 6,531 282 373
L1HS29f AC005090 7p Inserted in repeats Inserted in repeats … R 1,476 … …
L1HS30f AL022166 Xp11 CCCTAAACAGAAAGGAAAATGAGAC TCCTCATTGTGGTTCAAGGTTATAC 60 IF 4,795 97 175e
L1HS31h AC019212 X GACAACACAAAGAAAACCCAAGAT CTTATGTCCCAAAGCTAGTGAGTGA 56 FP 2,317 86 176
L1HS32f AC004911 7q TCTCTAATCCAGCCTTTCAATTC TGTTTCTTTTCCTGTGTGTTTCC 57 IF 463 280 384
L1HS34h AC002122 5p15 ATGTCTGTCTTGACATTCCTAAGC AATATGTAGAATGGCACAGGCTTC 58 IF 2,177 284 328
L1HS35g AC010081 Y CTACCACATAACTGAGTGACAGTTT CAATGTGCATCCATATAGCTGTGTT 61 FP 6,308 233 239
L1HS36f AC004000 Xq23 Inserted in repeats Inserted in repeats … R 6,038 … …
L1HS37 AC003080 7q31 Inserted in repeats Inserted in repeats … R 6,017 … …
L1HS38f AC004142 7q31 End of sequencing contig End of sequencing contig … EC … … …
L1HS39 AC005690 4 AGAACCAATCTTGCCCACAC TGAGGAGTTTCTGAGTAACCTGGTA 60 HF 6,337 155 189
L1HS41 AF222686 Xp11 Inserted in repeats Inserted in repeats … R 1,959 … …
L1HS42 AC020925 5 Inserted in repeats Inserted in repeats … R 580 … …
L1HS43 AF172277 7q21 TTTATTGCACCTCCTGGTAAAGTAG AGAGCACCATTAAACAACACAAGAT 58 IF 6,157 89 191
L1HS44f AC004883 7q TAGCTGTGCTTGTTATGTCCAGTT GAATGAGTTTTGTGTGGTTCTGTG 57 VLF 2,288 478 615e
L1HS45f AC004865 1 AATAGGCCCAGCTATTAGATTTAGC CCTTTAAACCTTTGAACACGATTT 53 FP 329 81 150e
L1HS46f,g AC006027 7p CCTGTGTTCCTTTTGTAATCC CAAATGTCTCTTCAAGGACTG 55 HF 6,382 326 183e
L1HS47 AC006986 Y AGTCAAATGATTTTTAACTGCTG GAGGGCAAGATCATGAAACA 58 Paralog 6,177 86 230e
L1HS48f AC005105 7p CGAAAAGCTTAGGAAACTGTTTGT TAAGCAATCTTCAGTTTAGGAAA 58 FP 1,242 810 420
L1HS49 AC010202 12q Inserted in repeats Inserted in repeats … R 612 … …
L1HS50 AF198097 Xp11 Inserted in repeats Inserted in repeats … R 6,308 … …
L1HS51 AC008055 12q22 GCCCCTTACGTTAGAATAGAAAC TGGATTGGTCCATACTACTGT 55 FP 1,094 272 239e
L1HS55f,g AC004704 4q25 Inserted in repeats Inserted in repeats … R 6,063 … …
L1HS56f AC005908 12p13 CCATTCATCAGCCATTTGCTA GTGGCTTTAAAACAACGAGATG 59 FP 6,545 459 494e
L1HS57f AC006222 4 CAGCAAGACTCTGTCTCTAAAATGAT GGACTTGAATTTGGTCTTGTTTCTA 59 LF 589 195 284e
L1HS58f AC005939 17 Inserted in repeats Inserted in repeats … R 6,101 … …
L1HS59 AC003678 11q12 Inserted in repeats Inserted in repeats … R 2,081 … …
L1HS60f AC006465 7p GAAGTATGGAAATTGAGTCACA CCCTAAGCTGTATCACTTTAAAACA 56 FP 445 104 246e
L1HS61f AC002288 16p12 ACGTTTGTGCTTCACTCTAAGTTCT CAAAATACCGGGATTATAGTTGTGA 57 FP 353 68 175e
L1HS62 AC006840 4 ATTAAAAGGAATGGACATGCAACAC AATCTCAAAAGCTTCCTTGCACT 60 FP 6,282 182 256e
L1HS63 AC023423 Y AAGAAAGTGTTGTCAGAGAGTGTGA AGGCCATTGGTCAGTCATAATTT 60 Paralog 6,160 115 200
L1HS65f AC004053 4q25 Inserted in repeats Inserted in repeats … R 1,781 … …
L1HS68f,g AC004200 6p21 Inserted in repeats Inserted in repeats … R 6,242 … …
L1HS69f,h AC004220 5 GGATGTTGATGATGGAGTCAGTC TAACCATTTGAAACCATTAGAGGTC 60 FP 1,410 76 180
L1HS70f,h AL049588 Xq GTTCATTTGAGTGAGGGTACTGTCT TAAGTCCCAAAAATTGCATCC 59 IF 3,174 175 256e
L1HS72 AL133413 9q CTGAGATGAGACAGCAGGTCTTC TCTGCTGAGATTCTTCCATTTACC 60 FP 825 147 221
L1HS73 AC018822 3p ATAAGGAGCCTAGGGAAGAACTTTT CAAGCATGCCTGAAACATCTAT 55 HF 1,126 462 162e
L1HS74g AC011990 17 CTGGACGTATTTCTTACAGAGTTGA CCCTAAGTTATTTTCCTTGAGGCTA 60 LF 6,163 125 186e
L1HS76 U08211 X End of sequencing contig End of sequencing contig … EC … … …
L1HS77f,h AB020867 8p TTCCTAAATGGCCTTACTATCCTTT TCAGAAGTGCTAACAACTCTAGTAGGA 58 HF 990 78 233
L1HS78f AP000084 21q22 TAGTACCTCCCTTAAAGAGCTG GAGGAAAAGAAAAGTGCCTGATA 59 IF 374 107 175e
L1HS80f AC017051.4 UL Inserted in repeats Inserted in repeats … R 1,823 … …
L1HS81 AP000962 21q21 AAGTGTTATATATTGGAGCAATTC ACAAGACAATGCCAATTTTAAGAGA 60 FP 848 148 401
L1HS83f AJ001189 Xq12 End of sequencing contig End of sequencing contig … EC … … …
L1HS85 AC008132 22q11 TTTGTATGCCTTGTGTTTTGTATTG AGGAGAGTCTCATCTCCAGAGTTAC 58 LF 593 79 183e
L1HS86g AL121825 22 GCAGTATCAGGAAATGCAATACAC GGGATTCAGTCACCTTTATTAGACA 60 HF 6,154 410 180e
L1HS87g AL078622 22 Inserted in repeats Inserted in repeats … R 6,065 … …
L1HS91f Z84572 13q12 ATACGTGCAAAACAGGAGATTTGA TGTTTATGGTGAAGGATAAGTCTCA 59 FP 1,619 78 167
L1HS92 AL022153 Xq ACAATCCCTACTTCAGAAAGTT CAACACTTTGATCATGAATAATAGCTC 57 FP 859 121 206
L1HS93 Z95325 Xq21 Inserted in repeats Inserted in repeats … R 4,882 … …
L1HS94f,g AL031586 Xq TCGTATGAATAACCTTGTGTTCTTG TTTAGATCCTCGTCACTCAAAGTGT 57 FP 6,250 151 264
L1HS95f AL023284 6q GGAAATTCTCAAGCTCAAGTTAAAA CTTTTAAAGTGTGTTCTCACAGTGG 60 FP 717 119 320e
L1HS97f AL030998 Xq AACCAAACCCACAATCAGTAGAA CTAGCTAAAGGTTTGCTATTTTT 58 FP 1,640 182 407e
L1HS98f AL022099 6p ATCTGCATTGGGCCAAGTTTT TCTCCTGTAAGACAGCACCATA 60 FP 1,561 129 242e
L1HS99f AL022726 6p Inserted in repeats Inserted in repeats … R 6,290 … …
L1HS100 Z98754 Xq Inserted in repeats Inserted in repeats … R 6,161 … …
L1HS101f Z72519 X End of sequencing contig End of sequencing contig … EC … … …
L1HS102f AL096677 20p CCATTTGCCATAAATAAAGGCATC ACTGTTACAAGTTTCCCCAAATGT 59 FP 6,741 611 542
L1HS103g AL121591 20 Inserted in repeats Inserted in repeats … R 6,019 … …
L1HS104f AL096799 20 GAGATGTGGTTTTGTTTGAACTG GCAGCTCACATAGTTTAGAGAAGAT 59 IF 6,196 131 219e
L1HS106 AL117339 10 CTGACTGTTGAAACTTCTCCATTG CAATAGACATGAAGGCATGGAAG 57 FP 3,103 378 345
L1HS108g AL031768 6p Inserted in repeats Inserted in repeats … R 6,091 … …
L1HS109g AL137191 14 GCCTTTCTATCTTTTGCTCTTGGT GACACATACCAATTACAGGCAAAG 59 FP 6,549 501 381e
L1HS110f,g AL078623 20 GGATTCTGACCTTATTCTAACAGCA AGTTGACTGTTGGTGTTGATTGTGT 56 HF 6,263 212 253
L1HS111f AC002069 7q21 Inserted in repeats Inserted in repeats … R 535 … …
L1HS112 AC018755 19 AGGTTCCATCTCTAATACTGGATAA TGATCACTTTGTTGTTAAGATGGAG 60 LF 1,686 102 170
L1HS113h AL133386 6p AGTTTTGGCCTGAGAGAGAAGTAGA GGTAGGCTAGAGATCCCTTCAATTA 55 FP 405 184 328e
L1HS115 AL132639 14 Inserted in repeats Inserted in repeats … R 182 … …
L1HS116 AC024610 18 CTGTGCACTTTTCCATATGTTTGAC TCTAATCTATGGTGGATGCTCTTTC 56 FP 252 76 189
L1HS117f,g AC005885 12q TGCAGTGTTCTATTTATGTCGTAGGT CGAGAGAGGGAGGAAAGTGAG 57 IF 6,629 535 176e
L1HS118 AC020599 4 ATGCCAGAAATACCTCTTTTACCTT CTAAGTGCAATTCTCTCAGATTTTG 60 IF 6,321 286 277
L1HS119f AC005739 5 GGCTTATTTAGAGCACCTGGATTTA GAGATCCAAAGCTTATGCTGTAAGT 60 FP 904 243 257e
L1HS123f AC005350 5q Inserted in repeats Inserted in repeats … R 397 … …
L1HS124f AC004499 20q TGACATAATTAATGGAGAAAACCAG GAGATCCCTGTCCTTGTGTGAT 60 FP 749 515 373e
L1HS125 AF001905 Xq25 CCTCACGTTTCTCCACATTGTA TTCTGGCCTTCATAGTGTTTTA 60 HF 332 96 169
L1HS126f AC004784 19q13 Inserted in repeats Inserted in repeats … R 1,552 … …
L1HS127 AC004384 X Inserted in repeats Inserted in repeats … R 225 … …
L1HS129f AC003100 4q25 Inserted in repeats Inserted in repeats … R 1,132 … …
L1HS130 AL133320 1p Inserted in repeats Inserted in repeats … R 6,066 … …
L1HS131 AL163152 14 TTGACTGTGTACTGCCAGTCTCT GTAACCTACCAGTTTACAGTTACC 58 IF 381 179 212
L1HS132 AP001693 21 CCCTGATACACCAGTATATCTTA GAAAAGAAAAGTGCCTGATA 56 IF 753 486 173e
L1HS133 AC008716 5 CATGGTGTCCCAGTGTTAAAAA TATCTCTTACCTCTTCTTGCCCATA 59 FP 3,351 821 738e
L1HS134 AF265340 16 CACAGTCAACTCAACCACTGAATAA AAGGAGATGGAAGTAAGTGCAAAC 60 FP 751 433 603e
L1HS135 AL137804 11p TTTTTGAAGGGAGTACAGTAATAGGT GCCTTCCATAGTTCCTATTTGC 58 FP 6,475 429 500e
L1HS136 AL157791 14 Inserted in repeats Inserted in repeats … R 175 … …
L1HS137 AL157879 5 Inserted in repeats Inserted in repeats … R 6,057 … …
L1HS150 AP000966 21q21 CAAGAACAACTGAAAAATGCAGAT CCCCTCAGTCTCTGGTTACCTA 58 FP 642 89 141e
L1HS151 AC019205 6 CTTTGATCAGTTCTTGGAACTAGGA CCTCTATGCCTTATTCATGCTTATC 60 FP 573 405 476e
L1HS153 Z84814 6p CCAATTCACTTTGTCTCCTAGAAAT AGTTCACGAAGTTGAAAGCTTATGT 60 IF 931 169 219
L1HS155 AC019050 2 TGGCATGTCAATATATACCTGAAGA GGAAAACAGAAATAAAAGACGGACA 60 FP 7,004 596 720
L1HS157f ALO49842 6q ATTCAAGTTCCAGTAAGCTGTGTTT GAACTTTGGAAAATTCACAACTACC 60 HF 892 143 245
L1HS158f AC008467 5 CAGCCCAGAGTAGTTCATGTTTT GAAGGAAAAGGAGCTGCTTAGATA 59 IF 6,194 147 207e
L1HS159 AC009976 Y Inserted in repeats Inserted in repeats … R 1,439 … …
L1HS160 AL121938 6q CTAAATAGGCAGAGGAAAGGAAAAC TAAACTTCCAAGAGATCAGCACTTC 60 HF 1,071 99 225e
L1HS162 AC009404 2 Inserted in repeats Inserted in repeats … R 463 … …
L1HS163 AL139114 9p GGGACAGGGGTTAAGATTTTATTTT AGTTCTCAACTGTAAAGGCAGTGTC 60 IF 2,898 85 251
L1HS164 AB045357 1q GGAAGGAAGTGGGGATAATAAGTAA CCCAATTCAGTTTCTTCATTCTATG 60 FP 1,507 193 267e
L1HS165 AC011666 1q21 CACAGTGATGGAGTTACAATCTTTG GCTTTAAAGTCAGACAGGCTTGAGT 62 FP 1,509 200 276e
L1HS166g AC021017 8 TGCCTGAAATGCTATTGGTAGTATC GTGCCCAGCCCATAATATAAA 60 IF 6,204 102 251
L1HS167 AC018637 7 Inserted in repeats Inserted in repeats … R 2,975 … …
L1HS168 AC009492 2 CTTTTTCAAGGCCATCTGTGAG AATCCTTACAATGAAAAGGGTGT 61 FP 666 97 180
L1HS169 AL118519 6q TATTGAGGTGTAACCAGCATACAAT CCACACGAAAGATATATGAATTGC 60 IF 6,289 214 288
L1HS171 AL137145 10 GAAAGTTCATGAAAGTTGTGATGC ACAAGAGAATCTATCTCCTGAAGAA 60 IF 6,157 91 198
L1HS172 AL133479 9p CTAAGATCAGTCACAGGCTTAATGA CAGGTGCAAGTGGTTTAATTTTC 60 IF 1,326 111 193e
L1HS173 AL359218 14 CACCATCTAGTGATTTTATGTTCTGC AATAATCCCCATTGACTGTGTACTG 55 HF 319 123 217e
L1HS174 AJ271735 Xq Inserted in repeats Inserted in repeats … R 3,252 … …
L1HS175 AL136382 1p Inserted in repeats Inserted in repeats … R 717 … …
L1HS176 AC025819 Y Inserted in repeats Inserted in repeats … R 1,522 … …
L1HS177 AC017015 18 CAAGTTCCTCACCAAATGAAACTAC TCCATTTTACTGATGTTGAATAGGC 58 HF 693 165 273e
L1HS178 AC023480 3p GAATATTGAGCTTTCTTCACCTTT CAAGCATGCCTGAAACATCTAT 60 HF 508 54 162e
L1HS179 AC017089 4 Inserted in repeats Inserted in repeats … R 3,573 … …
L1HS180 AC009276 7 GGAGTGTAGAATACTGGGGAAAATC CTTATTTCCCAATGAGCCCTGTA 56 IF 507 84 225e
L1HS181 AC025759 5 Inserted in repeats Inserted in repeats … R 1,179 … …
L1HS183f AC000100 19 End of sequencing contig End of sequencing contig … EC … … …
L1HS184 AL450108 X Inserted in repeats Inserted in repeats … R 6,094 … …
L1HS185 AL157837 1q CTGGCAGTTCCCTCAATGTAA GAGTAGCTAGCAAAACAGGTAATGAA 60 FP 604 108 214e
L1HS186 AL359332 14 GGTCTAACAATATTCATGATGC CCTCTTTTACCCTGTGAAGAAAAT 60 FP 6,313 249 205e
L1HS187 AL357153 14 Inserted in repeats Inserted in repeats … R 6,059 … …
L1HS189 AL512407 6 Inserted in repeats Inserted in repeats … R 907 … …
L1HS190 AC073893 Y TCTACTGTTCCATGCAATAGATGTG GGGTTCTTCTACCTCTGCATAACT 57 NR 3,243 190 331
L1HS191 AC007972 Y TCCTCCAAGACCCTCTAAAATAAAT TTTTGTCTTCCCTGAGTAAATTCTG 60 FP 2,645 122 251
L1HS192g AC018680 4 TTTCACTTTTTCTATGGTGATGAGG CTTAGAATGTTACACTTTTCCGACA 60 FP 6,218 155 196
L1HS193 AC018503 3 CTACAGTGGCATTTCTTTAGGACAA TATACAACAGAACTGAATCACTGAC 60 FP 6,296 239 288
L1HS195 AC044791 15 GCTTACATCTCAAATTCTGGTACCTT TGTAAGAGCCAAAGCCTTTTAAACT 60 FP 1,521 150 209
L1HS196 AC025263 12 Inserted in repeats Inserted in repeats … R 6,071 … …
L1HS197 AC027332 5 TGGAGTAGAATTCAAGCAAACTGAA AGAGTTTATGATAGGTCCCCATTCT 60 HF 6,226 97 260e
L1HS200 AC009892 19 Inserted in repeats Inserted in repeats … R 1,686 … …
L1HS202 AL391097 20 TTGTACCTATGATTTGTGTGATAGGC GCTCTACATAAAAAGATGTTCACCA 60 FP 990 754 435
L1HS203 AL354750 10 Inserted in repeats Inserted in repeats … R 152 … …
L1HS204 AL157815 13q ACTAGTTGATGACAAACTGGATGTG GAGTGGCATAATCAATTGCTAGAGA 60 FP 647 126 182e
L1HS206 AL355382 6 GTTTGTCAAGTGACAGGAATCTCTT GCTAAGTCATCAATAAGCCCCTAAT 60 FP 2,704 154 186
L1HS207g AL354861 9 CTTTGCATATCTCTGTCATCCTACA GATGAGATCATTCACACACTTTCTG 60 FP 6,208 164 170
L1HS208 AL354793 X AACATTGGGAGAAGTTTGCAGTAT CCAAGTTGTTAAGCACTCCATAGTT 60 FP 6,639 570 689e
L1HS209 AL158159 9 GATGAGTTATCTTTGACGCTTTGAC TGATAGATGAATGAGCTTTATGGTC 57 FP 508 118 213e
L1HS210 AL135908 6 ATGTGGGGAAGATGAAGAAATC GAAAACCCCACTATAGGAGTAAATTG 59 NR 5,322 132 564
L1HS211 AC079598 12 TCTATCGTCTCTGTCTTCTTAATGC AATGACACTCTGCCTTCAGACTTAG 57 NR 3,001 275 407e
L1HS212 AL157700 Xq TTCTAGCCCTCTACTAATGTCCTTG TTCTAAGGTAGCTGCAGATAAGTGG 60 FP 1,045 184 234e
L1HS213 AC087432 3p AATGCCTGATAAAAGTAGACACACC GTGGGAATATATCTTCTTGGGTTT 60 HF 1,710 89 188e
L1HS214 AC007483 3 TAGCTGAGAAACCATAAGCCTAGAA ACCTGAATGTCCACTCATTCACT 60 HF 4,159 328 330e
L1HS215 AC037423 9 Inserted in repeats Inserted in repeats … R 1,162 … …
L1HS216 AC023880 7 CTATACCAAATGCAGTCAGGATGTT TCCCATAACTCTGTCACACTAGAAA 59 FP 714 197 228
L1HS217 AC073148 7 Inserted in repeats Inserted in repeats … R 6,063 … …
L1HS218 AC016910 2 TCTTACAGCACTATTCAGTGTTTGC TTCCTCTCAAGGAACTCAAACC 60 FP 6,136 82 174
L1HS219 AC021020 3 Inserted in repeats Inserted in repeats … R 6,096 … …
L1HS220g AC016635 5 ATTGGCCTTCAGAAGTGATTAAGAC TAGATAGCCAGACAAACAAACCTTG 60 LF 6,244 135 260e
L1HS222 AL445932 6 TCTTTCTCCTCTTGTAATGTCTCAG AAGATACTGTGCTTCACTCTTCTGG 60 LF 6,195 118 238
L1HS223 AL450488 X Inserted in repeats Inserted in repeats … R 4,210 … …
L1HS224 AL358934 9 GATCTGAATCTTTGCTCTCCAGATA ACGTGGTACAAAAGAAAACACTGTC 60 FP 1,121 126 215
L1HS225 AL445523 X Inserted in repeats Inserted in repeats … R 3,537 … …
L1HS226h AL353153 6 CCCTAAGCCTGTCAGAAGTTAGTATC GCCATGAAAGATAAGGAGATAAGAG 60 LF 2,114 120 359
L1HS227 AL157701 X Inserted in repeats Inserted in repeats … R 518 … …
L1HS228 AL353657 13q AATATCCACTACCCAATTCCATAGG GCTGCAATTTAGCAGGATTTCT 60 HF 1,383 184 205
L1HS230 AL359174 6 Inserted in repeats Inserted in repeats … R 1,291 … …
L1HS231 AL354896 13 GAGTATGAGAGCTCTGCTTTCTGTC CTTGAAGGACTGGGATACTTGAAA 60 HF 2,289 379 481
L1HS232 AL365367 1p32 TGTCACTCCAGTGATAGAAGCTAGA ACAGTTAACTTCAAGGCAGGTTGAC 60 FP 1,181 69 214e
L1HS233 AL357507 6 TAGTTGTCTACAACCAAGTGCTGAG TCTGCATAGATCAGGAATTCTAAGG 59 IF 1,232 81 174
L1HS234g AL356438 6 Inserted in repeats Inserted in repeats … R 6,092 … …
L1HS235g AL158193 13 ACAGGATCTTAAGGTTGAAGGTTTG GGTTCTACCCAAAGTAGTCAAGAAA 59 IF 6,441 420 179
L1HS236 AL365400 X Inserted in repeats Inserted in repeats … R 1,711 … …
L1HS238 AL357519 6 GCAGGTAGGATACATGTAAGCATTT ATCACAGCAATGGCATATCATC 60 FP 2,155 374 360e
L1HS240g AL137845 X Inserted in repeats Inserted in repeats … R 6,103 … …
L1HS241 AP003112 8q23 GATAATCAGGTGATTGTGAACTGTG CTACCACCCTTTTTACTCCCTTTAC 60 FP 366 148 206e
L1HS242f Z80899 6p21 AGTTCACGGTCTCTATCTCTCCTTT AACCTGTCTTTGACTGTTGAGC 58 IF 576 150 277e
L1HS243 AC019041 2 CACTAACATTCTGCATCTCACAATC GTGGGAGGACATGAATAACACAT 58 FP 6,148 96 202
L1HS244 AC009269 15 Inserted in repeats Inserted in repeats … R 5,512 … …
L1HS245 AC017040 2 AAGGCTCTTTATCACAGGAAGTACC ACGTTAATCACCGATCATTGC 60 FP 2,141 294 263e
L1HS246g AC068723 15q21 Inserted in repeats Inserted in repeats … R 6,224 … …
L1HS247 AC009274 7 GTGTGAAGTATTACCTCGGTGTTG CTGTGTGGAGCAATAGTAACCAGAT 60 FP 2,238 286 275
L1HS248g AL360236 6 AGAACAAGTGAGTGGCTAAAACCTC AGCCAACAATTTTCCCATCTC 60 FP 6,705 658 710
L1HS249 AL355852 X Inserted in repeats Inserted in repeats … R 1,297 … …
L1HS250 AL162373 13 AGTACCTGGTGAGTTCTCCTCAAC GGTCTTTTGTGAGATGTCATACCTG 57 FP 2,055 110 194e
L1HS251 AL445429 6 Inserted in repeats Inserted in repeats … R 757 … …
L1HS252g AP002768 11q Inserted in repeats Inserted in repeats … R 6,026 … …
L1HS253 AP001955 4q Inserted in repeats Inserted in repeats … R 1,780 … …
L1HS254 AC013546 8 Inserted in repeats Inserted in repeats … R 5,961 … …
L1HS255 AC022731 8 Inserted in repeats Inserted in repeats … R 1,104 … …
L1HS256 AC019218 8 End of sequencing contig End of sequencing contig … EC … … …
L1HS257 AC016756 8 End of sequencing contig End of sequencing contig … EC … … …
L1HS258 AC024905 3 GATTGGACTCCATTTCCTCTTGTAT ATAAATTCTGGGACCTCTGCTTAAT 57 FP 1,717 1,011 643
L1HS259 AC020707 9 Inserted in repeats Inserted in repeats … R 1,893 … …
L1HS260 AL354982 9 GGCAACGGAATAATAGCTTCA GTCAGCACTCCCATCTTAAATGTCT 57 HF 6,461 358 510e
L1HS261 AL161631 9 Inserted in repeats Inserted in repeats … R 1,904 … …
L1HS262 AC013579 1 GATCCCTGTGTCTGGAGCACT GGAATTCATGGAGAAGGTGAGTT 60 FP 1,148 97 186
L1HS263 AL356139 9q Inserted in repeats Inserted in repeats … R 889 … …
L1HS264 AL391643 9 GAGGAGGAAGAAGGCTGATAATATG GACAGCCACTAAGTTAATGAGATCC 60 FP 284 133 174e
L1HS265g AC018938 9 GCATTATTTCTGGAGCACTCACT GTCTTGTGCTATTAAGCCTGGTCT 60 FP 6,087 105 207
L1HS266 AL137021 9q31 Inserted in repeats Inserted in repeats … R 207 … …
L1HS268 AC025428 10 CTTTGCTCTCTTGCTCCATGTAT TATCTGTTTACCAACCCATCTCACC 60 FP 6,235 90 283e
L1HS269 AC020642 10 End of sequencing contig End of sequencing contig … EC … … …
L1HS270 AC026989 14 Inserted in repeats Inserted in repeats … R 313 … …
L1HS271 AC020644 10 End of sequencing contig End of sequencing contig … EC … … …
L1HS272 AL157787 10 CTATGTCCTAGCCTTCCCAGATG AGAAAAGACAAGACAGGATAGGG 58 FP 1,125 201 223e
L1HS273 AL354951 10 End of sequencing contig End of sequencing contig … EC … … …
L1HS274 AC027118 10 GCACATGGCTTCTTAGCTAACTT CTTTCTTGCATAAATGACTCTGTCC 57 FP 2,081 611 317
L1HS275 AL590378 10 Inserted in repeats Inserted in repeats … R 1,414 … …
L1HS277 AC026393 10 Inserted in repeats Inserted in repeats … R 312 … …
L1HS278g AC027591 11 Inserted in repeats Inserted in repeats … R 6,020 … …
L1HS280 AC078971 11 Inserted in repeats Inserted in repeats … R 6,063 … …
L1HS281 AC037434 11 Inserted in repeats Inserted in repeats … R 343 … …
L1HS282 AP001002 11q CTTACCTCCAGAGCATGCACATTAT CCCCTCCTTCTCAATTTAAGGTTAC 61 FP 6,448 156 249e
L1HS283 AP000409 11 Inserted in repeats Inserted in repeats … R 2,294 … …
L1HS284 AC018619 11 AGATAGGAGAATCCTCTGGTCTTCT CTATTGTTGGGTACTTGGGTCACT 58 FP 1,877 174 268e
L1HS285 AC015772 11 End of sequencing contig End of sequencing contig … EC … … …
L1HS286 AC011829 11 Inserted in repeats Inserted in repeats … R 1,189 … …
L1HS287 AC021304 11 CCTTTTATCTGAAATAAGTGGTTGG CTTCCTTTAGCTGGGCTGTTCTAAG 61 VLF 1,693 95 216e
L1HS288g AC016775 11 Inserted in repeats Inserted in repeats … R 6,081 … …
L1HS289 AC021245 11 End of sequencing contig End of sequencing contig … EC … … …
L1HS290 AP001179 11q CCTGTCAGTCTTATCTTTGCTCTACA GGCATAGAGACAAATCCAAATTAAG 60 NR 6,537 285 235
L1HS291g AC025410 6 CTCCCACTACTTTATGGGAAGGT AGGACTTCCAATTCCTAGTATGCAG 58 HF 5,658 216 271e
L1HS292 AC073915 12q GACTCCACACTAGCTTCTTTGACTT GAGACTCAGTTGACAAGGAGTTACC 60 FP 1,117 117 213
L1HS293 AC026831 12 TTACAATGGATACGTTAGACAGCTC CCATAATTGGTTAGGATGATGAGAC 60 LF 2,517 417 317e
L1HS294 AC027442 12 CTTTACCTGTTCCACTAATCAC GGCACAAGATGGATATAAAGGA 57 FP 6,154 103 168
L1HS295 AC012144 13 GAGGAATGGTTGAACAGCTTG ATGTGGCTGGAGAAATACCTCTAAG 61 FP 713 100 208e
L1HS297h AC064857 12 GTCCAGAGTGATGCATTTTATTTGG GCATAGTCATTTAATGCATGTCAGC 58 FP 771 461 549e
L1HS298 AC025880 12 ATATACCATACTCCTTTCCCCTTCC TGAGCCCTGTATTTTAATCACTTGT 60 LF 1,037 80 235e
L1HS299 AC027287 12 End of sequencing contig End of sequencing contig … EC … … …
L1HS300 AC026577 1 Inserted in repeats Inserted in repeats … R 3,364 … …
L1HS301 AC027382 1 CTATCCCATAGATGGTGGGTAGAAT GAGGAAATAGCACAGGTATGGTAAA 61 IF 1,770 411 431
L1HS302 AL365220 1p21 Inserted in repeats Inserted in repeats … R 2,391 … …
L1HS303 AL451063 1 CTATGTTCTGGGAGAAGAGCTGAT CTAGGGTCAGAAAGAACTTTGATGT 62 FP 780 87 170
L1HS304 AL354885 1 End of sequencing contig End of sequencing contig … EC … … …
L1HS305 AC016371 1 CAAAAAGCAGCCCTATATTAGC GCCTGCCTCATTATCTTTCATT 58 FP 3,998 415 409e
L1HS306 AL136459 1 End of sequencing contig End of sequencing contig … EC … … …
L1HS307 AL390860 1 Inserted in repeats Inserted in repeats … R 6,066 … …
L1HS308 AL390200 1 CCTACTAGGCCCTCTTCTTTTGTAT GTCTTGTTGTGCCAGACACTTTA 62 IF 3,441 455 652e
L1HS309 AL391904 1 Inserted in repeats Inserted in repeats … R 2,161 … …
L1HS310 AL157946 1p31 Inserted in repeats Inserted in repeats … R 286 … …
L1HS311 AL162402 1p13 Inserted in repeats Inserted in repeats … R 693 … …
L1HS312 AL139225 1p13 Inserted in repeats Inserted in repeats … R 783 … …
L1HS313 AC034157 1 End of sequencing contig End of sequencing contig … EC … … …
L1HS314 AL357975 1 TGGCTAGCAAAAAGGTGGAC AGGGCAGAGAAAAATGGTCA 58 IF 6,215 109 255e
L1HS315 AL139137 1 AAGTCCCAATTCCCTAGTCTGTCT GACACAGAATCATGTCACAATACCC 61 FP 6,286 77 332
L1HS316 AC026905 1 CTTTAGCAGTTTTCATGCCTCCT AGGTTGATGGTAACCTGTAGGAAC 59 FP 6,240 173 245
L1HS317 AL356323 1 CTCTGCCTCAAGTGTGTCTTGACTA GAGAACACACCCTTGCTCAGTAAAT 59 FP 901 711 626e
L1HS318 AL365225 1 Inserted in repeats Inserted in repeats … R 5,243 … …
L1HS320 AL357973 1 GGGATTCAAATGGGAAACAAG CTCCTTTCCAGTATCTGCTCTTATG 60 IF 1,748 140 305
L1HS321 AL356455 1 End of sequencing contig End of sequencing contig … EC … … …
L1HS323 AC068071 1 End of sequencing contig End of sequencing contig … EC … … …
L1HS324 AL139284 1 End of sequencing contig End of sequencing contig … EC … … …
L1HS325 AL360154 1 End of sequencing contig End of sequencing contig … EC … … …
L1HS326g AC025702 1 CTCACCGTTATCAAAGGGTAGAAAC CTAGCCCCAAATTTGAGAAACAG 60 FP 6,250 156 289e
L1HS327 AC018874 1 GGTACAATGTAATCATGGGTTGG GAGTTAACCGTTAGTCCACAAGATG 58 FP 4,695 172 413
L1HS328 AL135842 1q21 Inserted in repeats Inserted in repeats … R 2,188 … …
L1HS329 AC058795 1 CTTCACCTCTGAATGACACACAT GGCTTCATAATGCATCGCTAA 60 FP 1,188 454 365e
L1HS330 AL139285 1p31 End of sequencing contig End of sequencing contig … EC … … …
L1HS331 AL138777 1q31 Inserted in repeats Inserted in repeats … R 1,064 … …
L1HS332 AC008110 1 CATGTTAGAACTGGCTCAAGTATCC CCTGCAGAAATTTGCCTTTAG 58 IF 2,850 87 227e
L1HS333 AC023026 1 End of sequencing contig End of sequencing contig … EC … … …
L1HS334 AC026253 2 ACACTTCTGAGAATTTCCCTGTG TTACTCCCTCTTTACTGTCTTGGTG 60 FP 1,095 199 341
L1HS335 AC023434 1 CATGCATCTCTGAACTACTGACTTG ATAAAAACCTGTTTAGGCCAAGG 60 IF 1,276 395 284e
L1HS336 AC013264 1 End of sequencing contig End of sequencing contig … EC … … …
L1HS337 AC010890 2 GGTACAATATGAGGCATCACGTA GTAGCATCCTTTATAGCTTTGCTGA 60 HF 3,174 210 329e
L1HS338 AC068953 2 End of sequencing contig End of sequencing contig … EC … … …
L1HS339 AC017035 2 End of sequencing contig End of sequencing contig … EC … … …
L1HS341 AC069384 2 End of sequencing contig End of sequencing contig … EC … … …
L1HS342 AC018591 2 GAGACTCAGTTGACAAGGAGTTACC AAACAGGACCTGCTGTCCATAA 60 FP 1,087 78 183e
L1HS343 AC068572 2 End of sequencing contig End of sequencing contig … EC … … …
L1HS344 AC048375 2 End of sequencing contig End of sequencing contig … EC … … …
L1HS345 AC073509 2 CACAGCATTTACCAAAGCACTC CTCAGTTCATTGCACAGTTTGG 60 LF 2,587 192 229e
L1HS346 AC016674 2 End of sequencing contig End of sequencing contig … EC … … …
L1HS348 AC018378.3 2 GAAATGGGAAGAGGAGTTGACA CCTATTTTTATCTCAGCTGATGTCG 60 HF 748 283 526e
L1HS349 AC009963 2 GGAGCTGGGAGAATTATTGAAAC CCACTCTCAACTACTGTCCAACAAG 60 HF 229 114 182
L1HS350 AC022605 2 TGGTATATAGTTCTAAGGACCCACAG GCTACTTTTGCTTCTGGGTGTT 58 FP 725 243 331e
L1HS351 AC013262 2 End of sequencing contig End of sequencing contig … EC … … …
L1HS352 AC073874 2 Inserted in repeats Inserted in repeats … R 970 … …
L1HS353 AC019324 2 TCCATGATAGAACACACTCTTCC AATCCCTGTCAAAACCAATCC 59 HF 1,822 426 167
L1HS354 AC012442 2 Inserted in repeats Inserted in repeats … R 6,217 … …
L1HS355 AC011901 2 Inserted in repeats Inserted in repeats … R 6,067 … …
L1HS356 AC009290 2 CATCCTGTTGAAGAACAGAGAGATG ATAGAGTGACCAGAAACTCCAGAGA 60 FP 6,290 156 250e
L1HS358 AC019130 2 GAGACTCTTTGGACTCAGAGTATAACC AGTCCTGTCATACCAGTTATTGGAC 59 FP 6,621 128 673
L1HS359 AC024062 2 Inserted in repeats Inserted in repeats … R 4,808 … …
L1HS360 AC023416 2 GAGGTCTTTGTGCAGAGGTATAAGA CTCACCAACATCAGTTTCCTTTG 60 IF 3,222 153 218e
L1HS361 AC073642 2 AGCCCATTAGATATATGTGGCTGT CTTTTTATATTGGTCACCCCCAAC 61 FP 6,319 281 372e
L1HS363h AC010913 2 GTTAGACAGCGACATGCACAG ACCTCTGTGCCTTACCAAAAAC 60 FP 577 106 198e
L1HS364 AC026860 3 CTTAGCCTCTGTCTTTAGGGAAAAC CATGACCAACGGTGCATAATA 60 HF 6,139 97 170e
L1HS365 AC068355 3 Inserted in repeats Inserted in repeats … R 888 … …
L1HS366 AC083853 3 AGAAAACTTCCAGACACCTATCC CTATGTCCTAGCCTTCCCAGATG 60 FP 1,088 163 183
L1HS367 AC078805 3 GACTCATATTACCCTGGACAACAAC AGTCTCTCCTTGCTCAGTTTGGTAG 60 FP 6,784 83 401e
L1HS368 AC023144 3 Inserted in repeats Inserted in repeats … R 168 … …
L1HS369 AC076971 3q End of sequencing contig End of sequencing contig … EC … … …
L1HS370 AC068365 3 GCAATCAGTTTCACACTCAACTG CATGTGATCTATTGTGTACCATCAGG 58 FP 3,436 146 323e
L1HS371 AC026611 3 End of sequencing contig End of sequencing contig … EC … … …
L1HS372 AC022077.13 3 GAAGAGAAAGAGGAAATAGCACAGG CTATCCCATAGATGGTGGGTAGAAT 60 IF 1,779 599 431e
L1HS373g AC022838 3 GAAAGAGAGTTCTCTGTACCACACC GTCATGTCCCAACAGGACATTT 60 VLF 6,294 215 231
L1HS374 AC063919 3 Inserted in repeats Inserted in repeats … R 6,265 … …
L1HS375 AC023139 3 TGTGGTACAGTCACACTACAAAG GATAGCATACACCATCATGCACT 60 IF 3,862 430 469e
L1HS376 AC069203 3 End of sequencing contig End of sequencing contig … EC … … …
L1HS377 AC078856 3q GGGAGATGTAGAGTTTTATGTGACC CTAATGTGCTGGGCAAACATAAGAT 57 FP 577 139 201
L1HS378 AC069225 3 CTCCCCTTTTTGCCTTACTTCT CTTACTTGCAATAGCCCATTCAC 60 IF 5,569 646 369e
L1HS380 AC024470 3 End of sequencing contig End of sequencing contig … EC … … …
L1HS382 AC055732 3 GCAGACACTAGAAGCTTTTGCAT GCCACAAAATCTGGCACTTATAG 58 FP 3,357 426 185
L1HS383g AC017085 3 ATTAGTCAGTAATAGAGCCCCCTGT AAAGACTTCTTTCCAGCTCTACCC 60 FP 6,493 267 515
L1HS385 AC078808 3 Inserted in repeats Inserted in repeats … R 6,068 … …
L1HS386 AC023438 UL End of sequencing contig End of sequencing contig … EC … … …
L1HS387 AC069417 3 End of sequencing contig End of sequencing contig … EC … … …
L1HS388 AC025818 3 Inserted in repeats Inserted in repeats … R 713 … …
L1HS389 AC024216 3 CATGTAGAGATGATCTTCAAAGCTG GCCTGATAAAAGTAGACACACCTG 60 FP 1,782 162 263
L1HS390 AC036128 4 End of sequencing contig End of sequencing contig … EC … … …
L1HS391 AC022040 4 GTGGACATCAGAGTATCCCTTTCT AGAAGGGTACATGACAACTGGTTAG 60 HF 889 113 203
L1HS393 AC013336 4 TACACAGAATCTGATGCTAGGAGAG CGGGAACATAAAGTCATAGCGTAAC 61 LF 751 277 412e
L1HS395 AC067804 4 GTTGCATTTTGGAAAGGAAGG TAGTGGAAAGACAGACAGTTTAGGG 61 IF 1,218 119 214
L1HS396 AC007512 4 AGACTCAAACTCAAAACTCCTGTGT TCACAAGCAGACATTTCTTACTGAA 60 FP 6,643 562 373e
L1HS397 AL161439 6 ACTCATCCTAGAGCTTTACCCAGTT CACAAAGTCAACAGGTTTGATCC 58 FP 1,085 259 231e
L1HS398 AC069349 8 End of sequencing contig End of sequencing contig … EC … … …
L1HS399 AC027502 4 Inserted in repeats Inserted in repeats … R 614 … …
L1HS401 AC068037 4 Inserted in repeats Inserted in repeats … R 1,342 … …
L1HS402 AC020593 4 Inserted in repeats Inserted in repeats … R 361 … …
L1HS403h AL158816 6 Inserted in repeats Inserted in repeats … R 360 … …
L1HS404 AC021700 4 CCACCTTACGTTCAGCTGTTAAT CGGTGATTAGGTGACAGCTTTT 60 LF 3,262 163 231e
L1HS405 AC032017 4 ATCAAAAGTCCTGTGTGTTTGTCTT GAAATTTTGCTAGACATAGCTGTCC 60 FP 1,206 396 202e
L1HS406 AC067842 4 GCAAGTTTTACCCATAGTACACAGG GTATGTAGAAGGCAGGGGTACACT 60 HF 3,589 209 302
L1HS407 AC041010 4 CTCACCAGTACGAGAAGCAAGTT TCTGACCTAGGGATGATTCTTCA 60 FP 413 227 217
L1HS408 AC019133 4 TTTTAGCCAAGCTCTTTGTTCC CATTATGGCAGCGTAGACATTG 56 FP 2,059 106 209
L1HS409 AC027782 4 End of sequencing contig End of sequencing contig … EC … … …
L1HS410g AC011633 4 GCTAAGCAATGGAGGAAAATATCG TGTACATGGTGTGAGGTATGAA 57 IF 6,211 100 244e
L1HS411 AC073338 4 ACACACACACGATGGAAAGTATCT AGCACATCCTAAATCTTCCTCTCT 60 FP 2,670 136 246
L1HS412 AC067901 4 End of sequencing contig End of sequencing contig … EC … … …
L1HS413g AC023332 4 TCATGAGCATCACTCTTACCATGT ACTCAGCTGACTTGCCATAAATGT 60 IF 6,199 127 191
L1HS414 AC025955 4 End of sequencing contig End of sequencing contig … EC … … …
L1HS415 AC009816 4 TCAGACCCATATATGAGCATAACC GCTTAGAAGAATTTTTAGCCAGGTG 56 HF 1,360 590 476e
L1HS416 AC068256 4 TTAGTCACTATGACTTGAGCCACTT TAGTGATAGTGTAGAGAGGGGGTTG 61 FP 822 238 284
L1HS417 AP001860 4 Inserted in repeats Inserted in repeats … R 865 … …
L1HS418g AC011981 2 CGATTTCTGTCTTTGTGAACGTAGT CCTTACAGAGTAGAAATCTCACGAT 60 IF 6,380 328 358
L1HS419 AC061978 4 Inserted in repeats Inserted in repeats … R 6,034 … …
L1HS420 AC041038 4 Inserted in repeats Inserted in repeats … R 6,066 … …
L1HS421 AC024974 UL End of sequencing contig End of sequencing contig … EC … … …
L1HS422 AC009577 4 End of sequencing contig End of sequencing contig … EC … … …
L1HS423 AC022672 11 CTCCCTGTCTTCTGGGTTAAAATA GGAAGTCCCACTTTTTCAGTAGAG 60 HF 5,680 201 248e
L1HS424 AC080124 4 End of sequencing contig End of sequencing contig … EC … … …
L1HS425 AC013724 4 Inserted in repeats Inserted in repeats … R 6,120 … …
L1HS426 AC023921 5 AGATTCCCTTTGGTATCCAAATCAC GTTGCCATACTCCGCATAAAGTC 60 IF 3,394 204 252
L1HS427 AC015990 4 TACGGGCAAAGACTGAGAGTACTAA TTCAGCCTTCTGACATCAAACT 57 IF 2,230 139 220e
L1HS429 AC060816 4 End of sequencing contig End of sequencing contig … EC … … …
L1HS430 AC024963 4 CAGAGAACCAACATGTAGGAACAA GTTACAGGTCAAAGGAGGTCTGAG 60 LF 4,034 127 223e
L1HS432 AC011399 5 End of sequencing contig End of sequencing contig … EC … … …
L1HS433 AC027339 5 End of sequencing contig End of sequencing contig … EC … … …
L1HS434 AC010437 5 ACCTGGGCCACATTTATTTTTC TGTAGAAGAAGACACCGTCGTTAG 60 FP 2,637 250 246e
L1HS435 AC026403 5 GACTCAGTTGACAAGGAGTTACCA ACACTAGCTTCTTTGACTTCACCA 55 FP 1,115 111 211e
L1HS437 AC023526 5 ATCTATCATTTATCTGCCCCGTCT ACAAGGATTAGCAGGAAGTCTGTT 60 IF 2,954 256 201e
L1HS438 AC011433 5 TCCTCTCACCAACCACATAAAGTA ATCCCTTGGATACAAAGATGTGC 60 FP 1,909 570 345
L1HS439 AC016573 5 End of sequencing contig End of sequencing contig … EC … … …
L1HS440 AC010409 5 Inserted in repeats Inserted in repeats … R 6,133 … …
L1HS441 AC026444 5 End of sequencing contig End of sequencing contig … EC … … …
L1HS442 AC027325 5 GACGGTTACTCAGAAAAACACAAG GTAGATGCCACTGTTACCCTGACT 60 IF 907 224 185e
L1HS443 AC021600 5 GCTAGACTCTCTACCTTTGGCTTT TGATACCTGACTCTATGCACCACT 56 FP 891 261 382
L1HS444 AC027315 5 TTATTGGAATAGCTTCTCCTGTCAC GCTGTTCCTAACTCTAGTCCTCCA 60 FP 464 303 296e
L1HS445 AC008374 5 Inserted in repeats Inserted in repeats … R 551 … …
L1HS446 AC010314 5 CTCGTGACATTTCCATCATATAGC TTAAGTCACCTAAGGGTTGTAAGTG 56 LF 6,142 109 182e
L1HS447 AC018759 5 GTACATCTCTTTGGACACTTCCACT GTTTAAGTCCAACATCCTGTTCTG 59 IF 691 560 386
L1HS448 AC016545 5 GTCAATTAGAGCATGAAGAAACCAC GTACATCTCTTTGGACACTTCCACT 60 IF 652 525 382e
L1HS449 AC011378 5 CTAGGGAGGTGAAAATTCAGATGT GCATGTTGCACAACAGTATGTA 60 FP 1,797 281 315e
L1HS450 AC011413 5 GTGAAGACTGTTGGTCAGTTACTTGT GTCATTGAGATTGGCAGGTAAAAG 60 HF 6,179 128 189e
L1HS451 AC010490 5 Inserted in repeats Inserted in repeats … R 994 … …
L1HS453 AL360232 6 Inserted in repeats Inserted in repeats … R 6,064 … …
L1HS455 AC027643 6 CATACACAAGGGCGAAGAGTTAAA GCCTCTTTTACATCAGTTACCACTC 60 FP 259 110 213e
L1HS456 AC026966 6 TAACACTTAGTGATTGCTGGGAGAG GGACAAGGTGAAGTGGAAAACTAGA 60 FP 1,641 121 215
L1HS457 AC025887 18 Inserted in repeats Inserted in repeats … R 286 … …
L1HS460 AL355489 6 Inserted in repeats Inserted in repeats … R 6,044 … …
L1HS461 AL358992 6 ATCCAGCAAAAGTATCCCTTAAGTA TCCTGTCCCAATTCTTTGTATTAT 60 LF 4,143 324 417
L1HS462 AC069403 11 Inserted in repeats Inserted in repeats … R 4,163 … …
L1HS463 AL391336 6 ATTAAATCTGTGTGGGAGTGG AGGGTGACTTCAGTGATATCTTCA 60 FP 6,304 247 346
L1HS465 AL356601 6 Inserted in repeats Inserted in repeats … R 1,936 … …
L1HS469h AC020586 UL GGTACTGGCTGTTCAGTATTTTT GTCTCAAAGCCCATTTCATAGTTC 60 FP 6,458 101 212e
L1HS472 AC018400 UL End of sequencing contig End of sequencing contig … EC … … …
L1HS476 AC079756 7 Inserted in repeats Inserted in repeats … R 897 … …
L1HS477 AC024730 7 Inserted in repeats Inserted in repeats … R 1,271 … …
L1HS478 AC069008 7 Inserted in repeats Inserted in repeats … R 991 … …
L1HS479 AC079855 7 CACTCGAAGGGTAAGTGAGATTTT CCACTAGCGCACCATTTTTCTAAT 58 FP 6,223 146 276
L1HS480 AC021836 4 AGAGGTAACCACTACCTTGCAACT GCCTCATGACAGGAGAAGAGATAAA 60 IF 2,701 272 265
L1HS483 AC026011 8 End of sequencing contig End of sequencing contig … EC … … …
L1HS484g AC073647 7 Inserted in repeats Inserted in repeats … R 6,692 … …
L1HS485 AC027189 8 CTCAGTTCCACATAAACCTTGACA GAAGCAATTAACCTAGCAGTAGGAC 60 FP 548 74 183e
L1HS486 AL356516 9 CCCTCATCACCAAATATCTGAGAA AGCTGACAGTCTAGTGAATGAGGTC 60 IF 905 139 196
L1HS487 AL162731 9 Inserted in repeats Inserted in repeats … R 6,079 … …
L1HS488g AL353649 9 CAAATTGTCAATGCTAACCACTCC GGAAAAAGGCACTTTGGCTTATC 62 FP 6,787 724 472e
L1HS489 AC009284.2 9 TCTCCAGAAACCATCACAGTAAGA AGGAGTTGAAAGTAGGATGGGTTT 60 FP 322 104 202e
L1HS490h AL358937 9 CAGCTGTCTTGCTAAGAATCCAT AGACCACAGACTCTTTGAGGGTAAG 60 FP 2,289 397 206
L1HS491 AL355303 10 End of sequencing contig End of sequencing contig … EC … … …
L1HS492 AL450466 10 End of sequencing contig End of sequencing contig … EC … … …
L1HS493 AL138764 10 GACTACCTTTCTGCGTATTCCTTTC GTCTAACAGGTACACGAGACTCCAT 61 IF 1,603 111 241e
L1HS494 AC068972 8 Inserted in repeats Inserted in repeats … R 2,974 … …
L1HS495 AC083848 8 Inserted in repeats Inserted in repeats … R 1,341 … …
L1HS496 AC024929 8 CCTTTGGAAGAGAAAGAGGATATG CTCCCAATGGAAAGGAACTTGTAT 60 FP 617 70 177
L1HS497 AC060775 8 GCCTAGTGGGAAGACAAAAAGTATT GCTGTAATGTTAACCTCGAAGTCGT 60 FP 950 346 439e
L1HS498g AC067844.3 8 AGGTTTCCCCAAAATTTACCC CTGATGTGTGGATTCACTGTTCTT 58 FP 6,281 184 295
L1HS499 AC024649 8 Inserted in repeats Inserted in repeats … R 1,045 … …
L1HS500 AC009630.5 8 GTGTTGCCTTCACCACAATAGTA TTTCTCCGAGTACAGGTTACGAG 60 FP 1,145 206 227e
L1HS501 AC022207 12 GTTGGCAACTTACTCTCAAATGG AAATACACTCGACTGGCCACTAA 60 FP 6,254 199 306e
L1HS502 AC011881 UL Inserted in repeats Inserted in repeats … R 537 … …
L1HS503 AC055118 13 GTGAGGAATGGTTGAACAGCTT TGTGGCTGGAGAAATACCTCTAA 60 FP 713 101 206e
L1HS504 AL158045 13 End of sequencing contig End of sequencing contig … EC … … …
L1HS505 AL162716 13 Inserted in repeats Inserted in repeats … R 384 … …
L1HS506 AL138684 13 End of sequencing contig End of sequencing contig … EC … … …
L1HS507 AC064832 15 End of sequencing contig End of sequencing contig … EC … … …
L1HS508 AC048381 15 ACAGAACCTTTTAGAGGGAATCG CTCCGTGTGGTAAAATTAGCTGT 58 HF 6,144 103 184
L1HS509 AL356017 14 CACTCATGACTGCCTGACTTCT CAGGGATTACTCTTCTGTTGTGG 61 FP 443 131 220e
L1HS510 AL390800 14 Inserted in repeats Inserted in repeats … R 1,837 … …
L1HS511 AL162632 14 Inserted in repeats Inserted in repeats … R 6,088 … …
L1HS512 AC021839 14 AAAGAGACAATCCACAGCATAGTTG GATTTATTCCTTCATGGAGATGTGC 61 HF 2,071 722 266e
L1HS513 AL160156 13 CCAAACTTGAGCCTCCTGTAATC CCTTGAAATAAGCAGGAAGAAGC 61 IF 809 142 235e
L1HS514 AL138961 13 CCTCAGCTTTGGATCCTGTAGTT AGAAGAATTGGGTCCTGTTGAA 60 FP 6,670 334 361
L1HS515 AL163537 13 GGATGGTAAAGGAGTGGCATAAT TGTGGAGCCCAGATCTTTTAAT 60 FP 637 106 193
L1HS516 AC044907 15 CCACAGTTTACACAGAAGCTGAA GAAGGAGTGGATGTGTTTCAGTAA 60 IF 6,151 101 212
L1HS518 AC074236 15 Inserted in repeats Inserted in repeats … R 2,636 … …
L1HS519 AC074100 15 End of sequencing contig End of sequencing contig … EC … … …
L1HS520g AC015558 15 Inserted in repeats Inserted in repeats … R 6,087 … …
L1HS521h AC067951 15 GCTTTGTTTACCTTTCTGCTCACT CACCAAAAGGAGAAGCCAATAAAG 60 FP 1,248 344 441e
L1HS522 AC009555 15 Inserted in repeats Inserted in repeats … R 190 … …
L1HS523 AC009658.6 15 CGTGGAAGATGTTACGAGGATTA AGAGAATGCGATGTCGATTAGAG 60 FP 570 105 204
L1HS524 AC020892 15 End of sequencing contig End of sequencing contig … EC … … …
L1HS525 AC009057 16 End of sequencing contig End of sequencing contig … EC … … …
L1HS526g AC025289 16 ACCCTCCAAGGTAACTGAATCTTA ATGCCCATGCTTGTTAGCTACTAC 60 IF 6,076 223 324e
L1HS527 AC026472 16 Inserted in repeats Inserted in repeats … R 1,224 … …
L1HS528 AC009021.4 16 CGGATGGGAGCACAAAATTACTA TGCCTACTAAGATACCTTGGAAATG 61 FP 991 172 278
L1HS529 AC022164 16 TGAGTAATGTGGCGGTTTAGTTC AACCAGTCAAGAAGCCAAAGAG 61 FP 6,143 116 193e
L1HS530 AC009063 16 End of sequencing contig End of sequencing contig … EC … … …
L1HS531 AC055852 17 Inserted in repeats Inserted in repeats … R 2,839 … …
L1HS532 AL356138 20 CCTCTAATCTATGGTGGATGCTCT TGGTAGGGAGCTGGTAAAAGTCTA 61 FP 308 175 242e
L1HS534 AC007448 17 End of sequencing contig End of sequencing contig … EC … … …
L1HS535 AC034266 17 End of sequencing contig End of sequencing contig … EC … … …
L1HS539 AC034266 17 End of sequencing contig End of sequencing contig … EC … … …
L1HS541 AC068204 18 End of sequencing contig End of sequencing contig … EC … … …
L1HS542 AC023983 18 End of sequencing contig End of sequencing contig … EC … … …
L1HS543 AC009267 18 TACATTAGTCTGCCTCTGATTCCA GGCCATTCTTTTCATCTGTTGTAG 61 FP 547 99 183
L1HS545 AC007768 18 TGGGAACTCATGTTACAGTTTCAC ATTTGTCATGATCACAGCCACCT 59 FP 2,514 95 216
L1HS546 AP001460 18 End of sequencing contig End of sequencing contig … EC … … …
L1HS547 AC010966 18 End of sequencing contig End of sequencing contig … EC … … …
L1HS548 AP001113 18 Inserted in repeats Inserted in repeats … R 6,237 … …
L1HS551 AC021325 18 Inserted in repeats Inserted in repeats … R 184 … …
L1HS552 AP001564 18 CAGTGAACTGCTTTCTCACAATTC CAAGAAGTTTTCCTGGAGTCTCTC 60 IF 4,144 123 235
L1HS554 AC027230 18 Inserted in repeats Inserted in repeats … R 561 … …
L1HS556 AC026898 18 End of sequencing contig End of sequencing contig … EC … … …
L1HS557 AP001019 18 ACAAAAGCACCTAGAAGCAGTCAT CTTTTTCTCCTATGCTCGTGGTAT 60 FP 2,277 85 229e
L1HS558 AC015819 18 TGCTTTCTTTCTTTCACATAGATCA GCAGACACGAATCACAGTTTGTAT 61 HF 983 128 203e
L1HS559 AC023394 18 Inserted in repeats Inserted in repeats … R 1,620 … …
L1HS561 AC013620 14 TACCCATTTAAAGGGCAAAGTG CTACCCATTTAAACCACTAATGCTG 61 LF 430 114 239e
L1HS562g AC019175 X TGTCTGTTCAGTCCTTTCTCACAT AGCAAAATGTATGCCGAAGACT 59 FP 6,170 115 181
L1HS564 AC034155.5 X TGCAATTGACATAGATACTGCAGAG CCCTTCCCTTTCTGTACATGTCTT 61 LF 2,085 471 425e
L1HS565 AL442646 X Inserted in repeats Inserted in repeats … R 6,029 … …
L1HS567 AL158143 X End of sequencing contig End of sequencing contig … EC … … …
L1HS568 AL356003 X Inserted in repeats Inserted in repeats … R 1,297 … …
L1HS569 AC021992 X Inserted in repeats Inserted in repeats … R 596 … …

Note.— Indeterminable data are denoted by ellipses.

a

Determined from accession information (GenBank) or by PCR analysis of monochromosomal hybrid cell-line DNA samples (National Institute of General Medical Sciences).

b

Amplification of each locus required 2 min 30 s at 94°C initial denaturing and 32 cycles for 1 min at 94°C, 1 min annealing temperature, and 1 min elongation at 72°C. A final extension time of 10 min at 72°C was also used.

c

EC = element at the end of sequencing contigs; R = element residing in other repeats; Paralog = element with a paralog; NR = element with inconclusive PCR results. Elements represented here are classified according to allele frequency as high-frequency (HF) (present in more than 2/3 [67%] but not in all alleles tested), intermediate-frequency (IF) (present in more than 1/3 [33%] of alleles tested but in no more than 2/3 [67%] of the alleles), low-frequency (LF) (present in no more than 1/3 [33%] alleles tested), or very-low-frequency (VLF) (or “private”) insertion polymorphisms or as fixed-present (FP) insertions (every individual tested had the L1 element in both chromosomes).

d

Empty product size is calculated computationally by removal of the Ta L1Hs elements and one direct repeat from the identified filled site. Subfamily-specific product size is calculated with an internal subfamily-specific primer located in the 3′ UTR to the proximal 3′ primer. For cases in which target-site duplication sequence was not found flanking the element, PCR product sizes may vary from those reported. Except as marked, all elements were assayed using the internal subfamily-specific primer and the flanking forward primer.

e

Found in 5′→3′ orientation in GenBank and assayed using the internal subfamily-specific primer and the flanking reverse primer.

f

Elements previously identified by Boissinot et al. (2000).

g

Full-length elements with intact ORFs.

h

Elements previously identified by Sheen et al. (2000) and Ovchinnikov et al. (2001).