Table 2.
Markers and Map of 6p22
| Gene (Exon Size) | Marker (NCBI Numbera) | Polymorphism | Frequencyb | Chromosomal Locationc(Nucleotide Position) | Distancefrom D6S260(bp) | Size of Interval(bp) |
| Jumonji | D6S260 | SSLP | NA | 17854849–17855203 | … | … |
| P1730 (rs1474588) | G/C | .330 | 17912083 | 56,880 | 56,880 | |
| P1283 (rs760659) | G/A | .196 | 17954963 | 99,760 | 42,880 | |
| Dysbindin gene:d | ||||||
| Exon 10 (413 bp) | 17973412–17973824 | |||||
| Exon 9 (144 bp) | 17975131–17975274 | |||||
| P1328 (rs742106) | C/T | .376 | 17974854 | 119,651 | 19,891 | |
| Exon 8 (156 bp) | 17983845–17984000 | |||||
| P1333 (rs742105) | C/T | .480 | 18023448 | 168,245 | 48,594 | |
| P1287 (rs760666) | C/T | .246 | 18039495 | 184,292 | 16,047 | |
| Exon 7 (23 bp) | 18043664–18043686 | |||||
| Exon 6 (133 bp) | 18065872–18066004 | |||||
| P1655 (rs2619539) | G/C | .537 | 18071229 | 216,026 | 31,734 | |
| Exon 5 (133 bp) | 18077948–18078080 | |||||
| P1635 | G/A | .102 | 18078476 | 223,273 | 7,247 | |
| P1325 (rs1011313) | T/C | .088 | 18083806 | 228,603 | 5,330 | |
| Exon 4 (61 bp) | 18088349–18088409 | |||||
| P1765 (rs2619528) | A/G | .167 | 18100203 | 245,000 | 16,397 | |
| P1757 (rs2005976) | A/G | .167 | 18101176 | 245,973 | 973 | |
| P1320 (rs760761) | C/T | .178 | 18101506 | 246,303 | 330 | |
| Exon 3 (51 bp) | 18101918–18101968 | |||||
| Exon 2 (54 bp) | 18102692–18102745 | |||||
| P1763 (rs2619522) | C/A | .155 | 18104023 | 248,820 | 2,517 | |
| P1578 (rs1018381) | C/T | .076 | 18107444 | 252,241 | 3,421 | |
| P1583 (rs909706) | C/T | .377 | 18111245 | 256,042 | 3,801 | |
| Exon 1 (160 bp) | 18113419–18113578 | |||||
| Unknown | P1586 (rs885773) | A/G | .093 | 18119860 | 264,657 | 8,615 |
| P1294 (rs441539) | A/G | .380 | 18215012 | 359,809 | 95,152 | |
| P1140 (rs1000117) | C/A | .301 | 18324363 | 469,160 | 109,351 | |
| D6S1676 | SSLP | NA | 18525332–18525609 | 670,406 | 201,246 | |
| AFM189YE3 | SSLP | NA | 18534500–18534767 | 679,564 | 9,158 |
a
Reference identification number for each SNP, from the dbSNP database (see the NCBI Single Nucleotide Polymorphism Web site).
b
Of the second allele shown. NA = not applicable.
c
From the UCSC August 2001 draft assembly of the genome (see the UCSC Human Genome Project Working Draft Web site).
d
Exons and their genomic locations are based on transcript BC011912.