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. 2013 Oct 7;8(10):e77147. doi: 10.1371/journal.pone.0077147

Table 1. The List of GOSlim Categories That Are Significantly Enriched For Differentially Expressed Genes Between The veA Deletion (Del) And The Wild-Type (WT) Strain As Well As Between The veA Overexpression (OE) And The WT Strain.

Comparison GO Category ID GO Category Description p-value
GO Process Categories that are Significantly Enriched for Upregulated Genes
Del vs WT GO:0042254 ribosome biogenesis 1.12E-06
. GO:0016070 RNA metabolic process 3.33E-02
OE vs WT GO:0005975 carbohydrate metabolic process 1.03E-02
. GO:0016070 RNA metabolic process 1.86E-02
GO Process Categories that are Significantly Enriched for Downregulated Genes
Del vs WT GO:0019748 secondary metabolic process 2.61E-34
. GO:0006996 organelle organization 1.22E-13
. GO:0016070 RNA metabolic process 1.24E-10
. GO:0009404 toxin metabolic process 1.38E-09
. GO:0006464 cellular protein modification process 3.31E-05
. GO:0042254 ribosome biogenesis 7.55E-05
. GO:0006259 DNA metabolic process 1.93E-04
. GO:0006810 transport 2.16E-04
. GO:0007049 cell cycle 5.40E-03
. GO:0005975 carbohydrate metabolic process 9.41E-03
. GO:0016192 vesicle-mediated transport 3.88E-02
OE vs WT GO:0019748 secondary metabolic process 5.21E-44
. GO:0006996 organelle organization 1.98E-13
. GO:0009404 toxin metabolic process 1.30E-09
. GO:0016070 RNA metabolic process 5.18E-06
. GO:0006810 transport 1.31E-05
. GO:0042254 ribosome biogenesis 1.20E-03
. GO:0006464 cellular protein modification process 1.38E-03
. GO:0007049 cell cycle 4.27E-03
. GO:0006259 DNA metabolic process 1.92E-02
. GO:0016192 vesicle-mediated transport 4.35E-02
. GO:0006950 response to stress 4.99E-02
GO Component Categories that are Significantly Enriched for Upregulated Genes
Del vs WT GO:0005730 nucleolus 4.57E-05
OE vs WT GO:0005886 plasma membrane 1.46E-04
. GO:0005576 extracellular region 1.67E-04
. GO:0005618 cell wall 1.72E-03
GO Component Categories that are Significantly Enriched for Downregulated Genes
Del vs WT GO:0005576 extracellular region 4.19E-18
. GO:0005634 nucleus 8.60E-06
OE vs WT GO:0005576 extracellular region 2.14E-07
GO Function Categories that are Significantly Enriched for Upregulated Genes
OE vs WT GO:0005215 transporter activity 4.01E-02
GO Function Categories that are Significantly Enriched for Downregulated Genes
Del vs WT GO:0016491 oxidoreductase activity 1.56E-06
. GO:0005198 structural molecule activity 1.32E-02
. GO:0005515 protein binding 3.63E-02
OE vs WT GO:0016491 oxidoreductase activity 5.25E-06