Table 1.
Transcripta | NormalFibroblasts | ASLymphoblasts | PWSFibroblasts | t(4;15)Fibroblasts |
SNRPN exon 2 | .8 (.009) | .9 (.0004) | .0006 (.001) | 2.1 (.007) |
SNRPN exon 3 | 2.8 (.03) | 2.7 (.001) | .002 (.002) | .02 (.008) |
SNRPN exon 57/58 | 1.6 (.001) | 1.9 (.001) | .001 (.001) | .01 (.001) |
IPW | 2.5 (.16) | 2.5 (.001) | .01 (.02) | .05 (.12) |
PAR-1 | 3.1 (.11) | 2.4 (−.13) | .5 (−.3) | .3 (.005) |
U21 | 1.5 (NC) | 1.4 (NC) | .6 (NC) | 1.4 (NC) |
PWCR1/HBII-85 | 3.3 (.01) | 1.7 (.04) | .01 (.02) | .01 (.02) |
Note.— Data are relative number of nanograms of the transcript of interest (−RT results). CT PCR values from amplification plots, as in figure 3, were interpreted on the basis of a standard curve and were normalized to data for β-actin for each cell type. NC indicates that all −RT reactions gave no signal and so no value was calculated (CT >40). Primer sequences are as follows: SNRPN exon 2: 5′-ACGAACTACAGAACAGCACGTACC-3′ and 5′-CTGCGTTTGACTTGGACTTCC-3′; SNRPN exon 3, 5′-TTCTCAGCAGCAGCAAGTACCT-3′ and 5′-TGCCTCAGTTCAGCCTGGA-3′; SNRPN exon 57/58, 5′-CAGGAAAGATCAAAACGATGCA-3′ and 5′-GGCAGCTATCTGGACCAATCAC-3′; IPW, 5′-TGCATTCTTTTAGTGGATAGATGCA-3′ and 5′-TCCCCATAATGGCTTGTGTGT-3′; PAR-1, 5′-AGAGGCCAGCCATAACTAGCC-3′ and 5′-TGAAGAGCGTTCCCCTGTG-3′; U21, 5′-TGAGCAGTCAGTAGTTGGTCCTTT-3′ and 5′-GAAACAATTATCGCATCATATGCAA-3′; PWCR1/HBII-85, 5′-TCGATGATGAGTCCCCCATAA-3′ and 5′-CATTTTGTTCAGCTTTTCCAAGG-3′.
IPW and PAR-1 are stable transcripts from the SNRPN locus. U21 is a ubiquitously expressed nonimprinted C/D box snoRNA encoded on chromosome 1. PWCR1/HBII-85 primers recognize 4 of 27 PWCR1/HBII-85 snoRNA sequences.