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. 2002 Jul 31;71(3):669–678. doi: 10.1086/342408

Table 1.

Quantitative RT-PCR Data from Normal Control Fibroblasts, AS Lymphoblasts, PWS Fibroblasts, and t(4;15) Fibroblasts[Note]

Transcripta NormalFibroblasts ASLymphoblasts PWSFibroblasts t(4;15)Fibroblasts
SNRPN exon 2 .8 (.009) .9 (.0004) .0006 (.001) 2.1 (.007)
SNRPN exon 3 2.8 (.03) 2.7 (.001) .002 (.002) .02 (.008)
SNRPN exon 57/58 1.6 (.001) 1.9 (.001) .001 (.001) .01 (.001)
IPW 2.5 (.16) 2.5 (.001) .01 (.02) .05 (.12)
PAR-1 3.1 (.11) 2.4 (−.13) .5 (−.3) .3 (.005)
U21 1.5 (NC) 1.4 (NC) .6 (NC) 1.4 (NC)
PWCR1/HBII-85 3.3 (.01) 1.7 (.04) .01 (.02) .01 (.02)

Note.— Data are relative number of nanograms of the transcript of interest (−RT results). CT PCR values from amplification plots, as in figure 3, were interpreted on the basis of a standard curve and were normalized to data for β-actin for each cell type. NC indicates that all −RT reactions gave no signal and so no value was calculated (CT >40). Primer sequences are as follows: SNRPN exon 2: 5′-ACGAACTACAGAACAGCACGTACC-3′ and 5′-CTGCGTTTGACTTGGACTTCC-3′; SNRPN exon 3, 5′-TTCTCAGCAGCAGCAAGTACCT-3′ and 5′-TGCCTCAGTTCAGCCTGGA-3′; SNRPN exon 57/58, 5′-CAGGAAAGATCAAAACGATGCA-3′ and 5′-GGCAGCTATCTGGACCAATCAC-3′; IPW, 5′-TGCATTCTTTTAGTGGATAGATGCA-3′ and 5′-TCCCCATAATGGCTTGTGTGT-3′; PAR-1, 5′-AGAGGCCAGCCATAACTAGCC-3′ and 5′-TGAAGAGCGTTCCCCTGTG-3′; U21, 5′-TGAGCAGTCAGTAGTTGGTCCTTT-3′ and 5′-GAAACAATTATCGCATCATATGCAA-3′; PWCR1/HBII-85, 5′-TCGATGATGAGTCCCCCATAA-3′ and 5′-CATTTTGTTCAGCTTTTCCAAGG-3′.

a

IPW and PAR-1 are stable transcripts from the SNRPN locus. U21 is a ubiquitously expressed nonimprinted C/D box snoRNA encoded on chromosome 1. PWCR1/HBII-85 primers recognize 4 of 27 PWCR1/HBII-85 snoRNA sequences.