Table 2. Capripoxviruses and other viruses tested by the snapback primer genotyping assay.
No | Strain name | Origin | Source | Viral DNAextracted from | Speciesorigin | Genotyping result |
1 | SPPV Turkey/98 Van 2 | Turkey | VCRI-Pendik/Turkey | Cell culture | Sheep | SPPV |
2 | SPPV Turkey/98 Sivas | Turkey | VCRI-Pendik/Turkey | Cell culture | Sheep | SPPV |
3 | SPPV Turkey/98 Denizli | Turkey | VCRI-Pendik/Turkey | Cell culture | Sheep | SPPV |
4 | SPPV Turkey/98 Çorum | Turkey | VCRI-Pendik/Turkey | Cell culture | Sheep | SPPV |
5 | SPPV Turkey/98 Darica | Turkey | VCRI-Pendik/Turkey | Cell culture | Sheep | SPPV |
6 | GTPV Turkey/98 Denizli | Turkey | VCRI-Pendik/Turkey | Cell culture | Goat | GTPV |
7 | SPPV Algerie/93 Djelfa | Algeria | INMV-LCV/Algeria | Cell culture | Sheep | SPPV |
8 | SPPV Algerie/05 Illizi | Algeria | INMV-LCV/Algeria | Cell culture | Sheep | SPPV |
9 | GTPV Ghana | Ghana | IAH-Pirbright/UK | Cell culture | Goat | GTPV |
10 | GTPV Bangladesh/86 | Bangladesh | IAH-Pirbright/UK | Cell culture | Goat | GTPV |
11 | GTPV Oman/84 | Oman | IAH-Pirbright/UK | Cell culture | Goat | GTPV |
12 | GTPV India/83 | India | IAH-Pirbright/UK | Cell culture | Goat | GTPV |
13 | GTPV Iraq/61 Gorgan | Iraq | IAH-Pirbright/UK | Cell culture | Goat | GTPV |
14 | GTPV Yemen/83 | Yemen | IAH-Pirbright/UK | Cell culture | Goat | GTPV |
15 | SPPV Nigeria C4 | Nigeria | IAH-Pirbright/UK | Cell culture | Sheep | SPPV |
16 | GTPV Saudi Arabia/93 | Saudi Arabia | IAH-Pirbright/UK | Cell culture | Goat | SPPV |
17 | SPPV OMAN/84 | Oman | IAH-Pirbright/UK | Cell culture | Sheep | GTPV |
18 | SPPV KS-1 | Kenya | HSL-AGES/Austria | Cell culture | Sheep | LSDV |
19 | LSDV Egypt/89 Ismalia | Egypt | HSL-AGES/Austria | Cell culture | Cattle | LSDV |
20 | SPPV Morocco vaccine | Morocco | Biopharma/Morocco | Cell culture | Sheep | SPPV |
21 | LSDV Sudan 99 Atbara | Sudan | CVRL/Sudan | Skin lesion | Cattle | LSDV |
22 | LSDV RSA 06 Springbok | South Africa | OVI/South Africa | Skin lesion | Springbok | LSDV |
23 | LSDV RSA 08 M143/08 10/6/08 | South Africa | OVI/South Africa | Skin lesion | Cattle | LSDV |
24 | LSDV RSA/07 Brahman | South Africa | OVI/South Africa | Skin lesion | Cattle | LSDV |
25 | LSDV RSA/00 OP126402 | South Africa | OVI/South Africa | Skin lesion | Springbok | LSDV |
26 | LSDV RSA06 D.19353 | South Africa | OVI/South Africa | Skin lesion | Cattle | LSDV |
27 | LSDV RSA/54 Haden | South Africa | OVI/South Africa | Cell culture | Cattle | LSDV |
28 | GTPV Desse I | Unknown | CIRAD/France | Cell culture | Goat | GTPV |
29 | GTPV Nigeria goat vaccine | Nigeria | CIRAD/France | Cell culture | Goat | SPPV |
30 | LSDV Burkina Banfora | Burkina Faso | CIRAD/France | Cell culture | Cattle | LSDV |
31 | SPPV Sangalcam/88 | Senegal | CIRAD/France | Cell culture | Sheep | SPPV |
32 | LSDV Niger Tougounous | Niger | CIRAD/France | Cell culture | Cattle | LSDV |
33 | GTPV Burkina Benogo 3 A | Burkina Faso | CIRAD/France | Cell culture | Goat | GTPV |
34 | GTPV Chad VC6 | Chad | CIRAD/France | Cell culture | Goat | GTPV |
35 | GTPV Chad VC8 | Chad | CIRAD/France | Cell culture | Goat | GTPV |
36 | SPPV vaccine Nigeria/99- 77 | Nigeria | CIRAD/France | Cell culture | Sheep | SPPV |
37 | SPPV Niger/88 | Niger | CIRAD/France | Cell culture | Sheep | SPPV |
38 | Embu/B338/2011 | Kenya | CVL/Kenya | Nodule | Cattle | LSDV |
39 | Marsabit/B291/2007 | Kenya | CVL/Kenya | Nodule | Cattle | LSDV |
40 | Kiambu/G143/2009 | Kenya | CVL/Kenya | Skin scrapping | Goat | GTPV |
41 | Kitengela/O58/2011 | Kenya | CVL/Kenya | Skin scrapping | Sheep | GTPV |
42 | Kitengela/O59/2011 | Kenya | CVL/Kenya | Skin scrapping | Sheep | GTPV |
43 | Bungoma/B624/2010 | Kenya | CVL/Kenya | Skin scrapping | Cattle | LSDV |
44 | Fairfield/B01/2009 | Ethiopia | NVI/Ethiopia | Skin lesion | Cattle | LSDV |
45 | Kajima/B01/2009 | Ethiopia | NVI/Ethiopia | Skin lesion | Cattle | LSDV |
46 | EIAR/B01/2009 | Ethiopia | NVI/Ethiopia | Skin lesion | Cattle | LSDV |
47 | Akaki/O01/2008 | Ethiopia | NVI/Ethiopia | Skin lesion | Sheep | GTPV |
48 | NVI/G01/2009 | Ethiopia | NVI/Ethiopia | Skin lesion | Goat | GTPV |
49 | Assosa/G01/2010 | Ethiopia | NVI/Ethiopia | Skin lesion | Goat | GTPV |
50 | Metekel/O01/2010 | Ethiopia | NVI/Ethiopia | Skin lesion | Sheep | GTPV |
51 | Adama/B01/2011 | Ethiopia | NVI/Ethiopia | Skin lesion | Cattle | LSDV |
52 | Adama/B02/2011 | Ethiopia | NVI/Ethiopia | Skin lesion | Cattle | LSDV |
53 | Mojo/B01/2011 | Ethiopia | NVI/Ethiopia | Skin lesion | Cattle | LSDV |
54 | Mojo/B02/22011 | Ethiopia | NVI/Ethiopia | Skin lesion | Cattle | LSDV |
55 | Wenji/B01/2011 | Ethiopia | NVI/Ethiopia | Skin lesion | Cattle | LSDV |
56 | Wenji/B02/2011 | Ethiopia | NVI/Ethiopia | Skin lesion | Cattle | LSDV |
57 | Wenji/B03/2011 | Ethiopia | NVI/Ethiopia | Skin lesion | Cattle | LSDV |
58 | Chagni/G01/2012 | Ethiopia | NVI/Ethiopia | Skin lesion | Goat | GTPV |
59 | Chagni/G02/2012 | Ethiopia | NVI/Ethiopia | Skin lesion | Goat | GTPV |
60 | Chagni/G03/2012 | Ethiopia | NVI/Ethiopia | Skin lesion | Goat | GTPV |
61 | Chagni/G04/2012 | Ethiopia | NVI/Ethiopia | Skin lesion | Goat | GTPV |
62 | Chagni/G05/2012 | Ethiopia | NVI/Ethiopia | Skin lesion | Goat | GTPV |
63 | Chagni/O06/2012 | Ethiopia | NVI/Ethiopia | Skin lesion | Sheep | GTPV |
Non Capripoxviruses | ||||||
1 | Orf virus D1701 | Germany | HSL-AGES/Austria | Cell culture | Sheep | Neg |
2 | Orf virus CE030ODV | unknown | HSL-AGES/Austria | Cell culture | Sheep | Neg |
3 | Orf virus Debrezeit/2012 | Ethiopia | NVI/Ethiopia | Skin lesion | Sheep | Neg |
4 | Bovine Papular Stomatitis virus M1 | Germany | HSL-AGES/Austria | Cell culture | Cattle | Neg |
5 | PPRV Nigeria 75-1 | Nigeria | CIRAD/France | Cell culture | goat | Neg |
The strains genotyped outside the group corresponding to the name of their host of origin are marked in bold.
Abbreviations: CIRAD = Centre de Coopération Internationale en Recherche Agronomique pour le Dévelopement; CVL: Central Veterinary Laboratories; CVRL = Central Veterinary Research Laboratories Centre; HSL-AGES = High Security Laboratory, Austrian Agency for Health and Food Safety; IAH = Institute for Animal Health; INMV-LCV = Institut National de la Médecine Vétérinaire, Laboratoire Central Vétérinaire; NVI = National Veterinary Institute; OVI = Onderstepoort Veterinary Institute; VCRI = Veterinary Control and Research Institute.