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. 2013 Oct 7;8(10):e75971. doi: 10.1371/journal.pone.0075971

Table 2. Capripoxviruses and other viruses tested by the snapback primer genotyping assay.

No Strain name Origin Source Viral DNAextracted from Speciesorigin Genotyping result
1 SPPV Turkey/98 Van 2 Turkey VCRI-Pendik/Turkey Cell culture Sheep SPPV
2 SPPV Turkey/98 Sivas Turkey VCRI-Pendik/Turkey Cell culture Sheep SPPV
3 SPPV Turkey/98 Denizli Turkey VCRI-Pendik/Turkey Cell culture Sheep SPPV
4 SPPV Turkey/98 Çorum Turkey VCRI-Pendik/Turkey Cell culture Sheep SPPV
5 SPPV Turkey/98 Darica Turkey VCRI-Pendik/Turkey Cell culture Sheep SPPV
6 GTPV Turkey/98 Denizli Turkey VCRI-Pendik/Turkey Cell culture Goat GTPV
7 SPPV Algerie/93 Djelfa Algeria INMV-LCV/Algeria Cell culture Sheep SPPV
8 SPPV Algerie/05 Illizi Algeria INMV-LCV/Algeria Cell culture Sheep SPPV
9 GTPV Ghana Ghana IAH-Pirbright/UK Cell culture Goat GTPV
10 GTPV Bangladesh/86 Bangladesh IAH-Pirbright/UK Cell culture Goat GTPV
11 GTPV Oman/84 Oman IAH-Pirbright/UK Cell culture Goat GTPV
12 GTPV India/83 India IAH-Pirbright/UK Cell culture Goat GTPV
13 GTPV Iraq/61 Gorgan Iraq IAH-Pirbright/UK Cell culture Goat GTPV
14 GTPV Yemen/83 Yemen IAH-Pirbright/UK Cell culture Goat GTPV
15 SPPV Nigeria C4 Nigeria IAH-Pirbright/UK Cell culture Sheep SPPV
16 GTPV Saudi Arabia/93 Saudi Arabia IAH-Pirbright/UK Cell culture Goat SPPV
17 SPPV OMAN/84 Oman IAH-Pirbright/UK Cell culture Sheep GTPV
18 SPPV KS-1 Kenya HSL-AGES/Austria Cell culture Sheep LSDV
19 LSDV Egypt/89 Ismalia Egypt HSL-AGES/Austria Cell culture Cattle LSDV
20 SPPV Morocco vaccine Morocco Biopharma/Morocco Cell culture Sheep SPPV
21 LSDV Sudan 99 Atbara Sudan CVRL/Sudan Skin lesion Cattle LSDV
22 LSDV RSA 06 Springbok South Africa OVI/South Africa Skin lesion Springbok LSDV
23 LSDV RSA 08 M143/08 10/6/08 South Africa OVI/South Africa Skin lesion Cattle LSDV
24 LSDV RSA/07 Brahman South Africa OVI/South Africa Skin lesion Cattle LSDV
25 LSDV RSA/00 OP126402 South Africa OVI/South Africa Skin lesion Springbok LSDV
26 LSDV RSA06 D.19353 South Africa OVI/South Africa Skin lesion Cattle LSDV
27 LSDV RSA/54 Haden South Africa OVI/South Africa Cell culture Cattle LSDV
28 GTPV Desse I Unknown CIRAD/France Cell culture Goat GTPV
29 GTPV Nigeria goat vaccine Nigeria CIRAD/France Cell culture Goat SPPV
30 LSDV Burkina Banfora Burkina Faso CIRAD/France Cell culture Cattle LSDV
31 SPPV Sangalcam/88 Senegal CIRAD/France Cell culture Sheep SPPV
32 LSDV Niger Tougounous Niger CIRAD/France Cell culture Cattle LSDV
33 GTPV Burkina Benogo 3 A Burkina Faso CIRAD/France Cell culture Goat GTPV
34 GTPV Chad VC6 Chad CIRAD/France Cell culture Goat GTPV
35 GTPV Chad VC8 Chad CIRAD/France Cell culture Goat GTPV
36 SPPV vaccine Nigeria/99- 77 Nigeria CIRAD/France Cell culture Sheep SPPV
37 SPPV Niger/88 Niger CIRAD/France Cell culture Sheep SPPV
38 Embu/B338/2011 Kenya CVL/Kenya Nodule Cattle LSDV
39 Marsabit/B291/2007 Kenya CVL/Kenya Nodule Cattle LSDV
40 Kiambu/G143/2009 Kenya CVL/Kenya Skin scrapping Goat GTPV
41 Kitengela/O58/2011 Kenya CVL/Kenya Skin scrapping Sheep GTPV
42 Kitengela/O59/2011 Kenya CVL/Kenya Skin scrapping Sheep GTPV
43 Bungoma/B624/2010 Kenya CVL/Kenya Skin scrapping Cattle LSDV
44 Fairfield/B01/2009 Ethiopia NVI/Ethiopia Skin lesion Cattle LSDV
45 Kajima/B01/2009 Ethiopia NVI/Ethiopia Skin lesion Cattle LSDV
46 EIAR/B01/2009 Ethiopia NVI/Ethiopia Skin lesion Cattle LSDV
47 Akaki/O01/2008 Ethiopia NVI/Ethiopia Skin lesion Sheep GTPV
48 NVI/G01/2009 Ethiopia NVI/Ethiopia Skin lesion Goat GTPV
49 Assosa/G01/2010 Ethiopia NVI/Ethiopia Skin lesion Goat GTPV
50 Metekel/O01/2010 Ethiopia NVI/Ethiopia Skin lesion Sheep GTPV
51 Adama/B01/2011 Ethiopia NVI/Ethiopia Skin lesion Cattle LSDV
52 Adama/B02/2011 Ethiopia NVI/Ethiopia Skin lesion Cattle LSDV
53 Mojo/B01/2011 Ethiopia NVI/Ethiopia Skin lesion Cattle LSDV
54 Mojo/B02/22011 Ethiopia NVI/Ethiopia Skin lesion Cattle LSDV
55 Wenji/B01/2011 Ethiopia NVI/Ethiopia Skin lesion Cattle LSDV
56 Wenji/B02/2011 Ethiopia NVI/Ethiopia Skin lesion Cattle LSDV
57 Wenji/B03/2011 Ethiopia NVI/Ethiopia Skin lesion Cattle LSDV
58 Chagni/G01/2012 Ethiopia NVI/Ethiopia Skin lesion Goat GTPV
59 Chagni/G02/2012 Ethiopia NVI/Ethiopia Skin lesion Goat GTPV
60 Chagni/G03/2012 Ethiopia NVI/Ethiopia Skin lesion Goat GTPV
61 Chagni/G04/2012 Ethiopia NVI/Ethiopia Skin lesion Goat GTPV
62 Chagni/G05/2012 Ethiopia NVI/Ethiopia Skin lesion Goat GTPV
63 Chagni/O06/2012 Ethiopia NVI/Ethiopia Skin lesion Sheep GTPV
Non Capripoxviruses
1 Orf virus D1701 Germany HSL-AGES/Austria Cell culture Sheep Neg
2 Orf virus CE030ODV unknown HSL-AGES/Austria Cell culture Sheep Neg
3 Orf virus Debrezeit/2012 Ethiopia NVI/Ethiopia Skin lesion Sheep Neg
4 Bovine Papular Stomatitis virus M1 Germany HSL-AGES/Austria Cell culture Cattle Neg
5 PPRV Nigeria 75-1 Nigeria CIRAD/France Cell culture goat Neg

The strains genotyped outside the group corresponding to the name of their host of origin are marked in bold.

Abbreviations: CIRAD = Centre de Coopération Internationale en Recherche Agronomique pour le Dévelopement; CVL: Central Veterinary Laboratories; CVRL = Central Veterinary Research Laboratories Centre; HSL-AGES = High Security Laboratory, Austrian Agency for Health and Food Safety; IAH = Institute for Animal Health; INMV-LCV = Institut National de la Médecine Vétérinaire, Laboratoire Central Vétérinaire; NVI = National Veterinary Institute; OVI = Onderstepoort Veterinary Institute; VCRI = Veterinary Control and Research Institute.