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Illustrative Results Comparing Conventional Linkage Disequilibrium (LD) to Hierarchical Linkage Disequilibrium (HLD)[Note]
|
Log Odds Ratio (SE) |
|||
| SNP | Location(kb) | First-Stage LD | HLD Model Ba |
| 45 | 520 | 2.90 (1.08) | 3.46 (.35)b |
| 46 | 522 | 3.02 (.42) | 3.32 (.27)b |
Note.— Data from Daly et al. (2001).
Model B uses haplotype block information as a second-stage.
The second-stage log odds ratio for haplotype block 7 in model B is 3.52.
