Table 3.
Noncentrality Parameters and Powers for TDTs Based on Grandparents as Compared with Parents, Together with Asymptotic Relative Efficiencies[Note]
χ2 Noncentrality Parameter (Power)b for |
|||||
Grandparental-Transmission Testd with |
Parental-Transmission Test with |
||||
Scenarioa | 1 df | 2 df | 1 dfe | 2 df | AREc for Grandparents vs. Parents |
1, 1, 1, 1 | .0000 (.05) | .0000 (.05) | .0000 (.05) | .0000 (.05) | … |
2, 2, 1, 1 | .0576 (.92) | .0632 (.90) | .0368 (.77) | .0408 (.73) | 1.57 |
2, 4, 1, 1 | .0785 (.98) | .0785 (.95) | .0498 (.88) | .0498 (.81) | 1.58 |
1, 1, 2, 4 | .0092 (.27) | .0093 (.21) | .0000 (.05) | .0000 (.05) | ∞ |
1, 1, 3, 9 | .0276 (.65) | .0282 (.56) | .0000 (.05) | .0000 (.05) | ∞ |
1, 3, 1, 1 | .0037 (.14) | .0177 (.37) | .0025 (.11) | .0127 (.28) | 1.48 |
1, 3, 2, 2 | .0289 (.67) | .0479 (.80) | .0051 (.17) | .0216 (.44) | 5.67 |
2, 4, 1.5, 2 | .1248 (1.00) | .1248 (1.00) | .0582 (.93) | .0582 (.87) | 2.14 |
Note.— Calculations assumed a stratified population in which half have a baseline risk of .01 and an allele prevalence of .05 and the other half have a baseline risk of .03 and an allele prevalence of .10.
The numbers denoting each scenario represent R1, R2, S1, and S2, respectively.
Example powers (for a level-.05 test) are given in parentheses for studies with 200 families.
Based on 1-df LRTs. ARE = asymptotic relative efficiency.
Test 2.
Based on the log-linear model with parental mating type and C as predictors.