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. 2013 Oct 8;8(10):e76957. doi: 10.1371/journal.pone.0076957

Table 1. Summary of the genes for which we designed primers.

Length (CDS; in bp)
Arabidopsis
Abbreviation Protein Name Arabid. Ferns TAIR Gn# # of Introns Chromo. #
1 ApPEFP_C appr-1-p processing enzyme family protein 1689 ~1650-1743 AT1G69340 13 1
2 CRY2 cryptochrome 2 2046 ~2000 AT4G08920 3 4
3 CRY4 cryptochrome 4 1839 ~2100 AT1G04400 3 1
4 DET1 Nuclear-localized regulator of plant development 1632 ~1600-2700 AT4G10180 9 4
5 gapCpSh Plastid-localized GAPDH, short copy 1266; 1260 1315 AT1G79530; AT1G16300 13 1
6 IBR3 IBA-Response 3 (acyl-CoA dehydrogenase) 2475 ~2445-2490 AT3G06810 16 3
7 pgiC glucose-6-phosphate isomerase / sugar isomerase family protein 1683 --a AT5G42740 21 5
8 SQD1 Sulfoquinovosyldiacylglyerol 1 1431 ~1515-1521 AT4G33030 1 4
9 TPLATE a cytokinesis protein targeted to the cell plate 3531 --a AT3G01780 6 3
10 transducin transducin family protein / WD-40 repeat family protein 2868 --a AT3G21540 11 3

For each gene, we list its length in ferns and in Arabidopsis, provide the TAIR accession number for the Arabidopsis sequence (as well as its number of introns and chromosomal position). The TreeBASE accession number for our “all-in” fern alignments is S14616. Comparisons with Arabidopsis thaliana are based on the most closely related homolog(s). a These loci were trimmed to a focal region prior to completion, so the full length of the coding DNA sequence (CDS) is unknown.