Table 1.

Annotation summary

	Genes	TFs	Interactions		Annotations	Articles
			Higha	All
Total	100	68	212	322	1133	410
Gluconeogenesis	18	37	56	77	252	117
Fatty acid metabolism	19	20	34	57	203	79
TCA cycle	23	24	29	52	146	64
Glyoxylate cycle	5	27	16	26	102	67
Ethanol metabolism	5	17	13	16	108	76
Glycerol metabolism	3	19	9	18	36	24
Lactate metabolism	3	10	11	11	38	21
Glucose signaling	11	22	25	35	147	71
TF-TF	14	24	19	31	101	69

Shown are the numbers for the total annotation outcome and for the corresponding subprocesses of the diauxic shift. TF: Transcription Factor.

^aHigh-confidence gene regulatory interactions have experimental evidence for binding and expression (Materials and Methods). All interactions include low- and high-confidence interactions.