Table 1. Frequency of 42 human papillomavirus (HPV) types/putative types in lesions and in healthy skin biopsy samples.
| Genus /species, type/ putative type |
Closest related type (%)a |
Samples, no. | |||||
|---|---|---|---|---|---|---|---|
| Lesions | Healthy skin (n = 349) |
Total (n = 698) |
|||||
| SCC (n = 82) |
BCC (n = 126) |
AK (n= 49) |
Benign (n = 92) |
||||
| Beta-1 | |||||||
| HPV5 | 1 | 1 | |||||
| FA23b | HPV5 (75) | 1 | 1 | 1 | 1 | 1 | 5 |
| FA37 | HPV5 (77) | 2 | 1 | 3 | |||
| HPV8 | 1 | 1 | 2 | 4 | |||
| HPV12 | 1 | 1 | 2 | ||||
| HPV14 | 2 | 2 | 1 | 3 | 8 | ||
| HPV19 | 1 | 1 | 2 | ||||
| FA14 | HPV19 (75) | 1 | 2 | 3 | |||
| HPV20 | 3 | 2 | 7 | 6 | 18 | ||
| vs20-4c | HPV20 (76) | 1 | 2 | 3 | |||
| HPV21 | 1 | 3 | 2 | 3 | 2 | 11 | |
| FA25 | HPV21 (76) | 1 | 1 | 2 | 4 | ||
| HPV24 | 1 | 1 | 1 | 5 | 8 | ||
| FA18 | HPV24 (76) | 1 | 1 | ||||
| FAIMVS11 | HPV24 (77) | 1 | 1 | ||||
| vs75-3 | HPV24 (82) | 1 | 1 | 1 | 3 | ||
| HPV93 | 1 | 1 | 2 | ||||
| Beta-2 | |||||||
| HPV9 | 1 | 1 | 1 | 3 | |||
| HPV15 | 1 | 1 | 2 | ||||
| FA84 | HPV15 (76) | 1 | 1 | ||||
| sck59/FAN19d | HPV15 (80) | 1 | 1 | ||||
| HPV23 | 1 | 1 | 2 | 1 | 5 | ||
| FA16 | HPV23 (81) | 1 | 1 | 2 | |||
| HPV37 | 2 | 1 | 1 | 4 | |||
| HPV38 | 3 | 2 | 2 | 3 | 10 | ||
| FA51 | HPV38 (76) | 1 | 1 | 2 | |||
| HPV80 | 2 | 2 | 4 | ||||
| FA5 | HPV80 (78) | 1 | 1 | 2 | |||
| FA75 | HPV80 (79) | 1 | 1 | 1 | 3 | ||
| FA85 | HPV80 (75) | 2 | 1 | 3 | 1 | 7 | |
| vs92-1 | HPV80 (79) | 1 | 1 | ||||
| vs102-4 | HPV80 (83) | 1 | 1 | ||||
| HPV100 | 1 | 1 | |||||
| FA40 | HPV17 (76) | 1 | 1 | ||||
| Beta-3 | |||||||
| HPV49 | 1 | 1 | 1 | 3 | |||
| HPV76 | 1 | 1 | |||||
| Beta-5 | |||||||
| HPV96 | 1 | 1 | |||||
| Gamma | |||||||
| FA137 | HPV65 (69) | 1 | 1 | ||||
| FA117 | HPV50 (70) | 1 | 1 | ||||
| sck29/FAN5e | HPV50 (73) | 1 | 1 | ||||
| Alpha-4 | |||||||
| HPV27 | 1 | 1 | |||||
| Alpha-9 | |||||||
| HPV16 | 1 | 1 | |||||
NOTE. AK, actinic keratosis; BCC, basal cell carcinoma; SCC, squamous cell carcinoma.
a
Sequence homology between putative HPV type and HPV type, of parts of the L1 open reading frame, by Blast.
b
FA: ~430 nt.
c
vs: ~680 nt.
d
191 nt.
e
297 nt.