Table 5.
Selected features for E. coli data set.
| Feature | N4 | N5 | N6 | N7 | N8 | N9 | N10 | N11 | N12 | N13 | C9 | m13 | TOT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | PR (phyletic retention) | • | • | • | • | • | • | • | • | • | • | • | • | 12 |
| 2 | Open reading frame length | • | • | • | • | • | • | • | • | 8 | ||||
| 3 | Average PSSM of A.A. C | • | • | • | • | • | • | 6 | ||||||
| 4 | Degree related to F.I. | • | • | • | • | • | • | 6 | ||||||
| 5 | Degree related to A.I. | • | • | • | • | • | 5 | |||||||
| 6 | Degree related to PI | • | • | • | • | • | 5 | |||||||
| 7 | Average PSSM of A.A. A | • | • | • | • | 4 | ||||||||
| 8 | Average PSSM of A.A. R | • | • | • | • | 4 | ||||||||
| 9 | Average hydrophobic | • | • | • | • | 4 | ||||||||
| 10 | Bit string of DSS for PI | • | • | • | • | 4 | ||||||||
| 11 | Paralog count | • | • | • | • | 4 | ||||||||
| 12 | Occurrence of A.A. M | • | • | • | 3 | |||||||||
| 13 | Occurrence of A.A. W | • | • | • | 3 | |||||||||
| 14 | Occurrence of A.A. E | • | • | 2 | ||||||||||
| 15 | Occurrence of A.A. F | • | • | 2 | ||||||||||
| 16 | Occurrence of A.A. G | • | • | 2 | ||||||||||
| 17 | Occurrence of A.A. I | • | • | 2 | ||||||||||
| 18 | Average PSSM of A.A. Y | • | • | 2 | ||||||||||
| 19 | Cysteine location-4 | • | • | 2 | ||||||||||
| 20 | KLV (clique level) for PI | • | • | 2 | ||||||||||
| 21 | Degree related to PI and GC | • | • | 2 | ||||||||||
| 22 | Strand bias | • | • | 2 | ||||||||||
| 23 | Occurrence of A.A. A | • | 1 | |||||||||||
| 24 | Occurrence of A.A. C | • | 1 | |||||||||||
| 25 | Occurrence of A.A. H | • | 1 | |||||||||||
| 26 | Occurrence of A.A. P | • | 1 | |||||||||||
| 27 | Occurrence of A.A. S | • | 1 | |||||||||||
| 28 | Average PSSM of A.A. N | • | 1 | |||||||||||
| 29 | Average PSSM of A.A. G | • | 1 | |||||||||||
| 30 | Average PSSM of A.A. K | • | 1 | |||||||||||
| 31 | Average PSSM of A.A. F | • | 1 | |||||||||||
| 32 | Average PSSM of A.A. T | • | 1 | |||||||||||
| 33 | Average PSSM of A.A. V | • | 1 | |||||||||||
| 34 | Average distance of every two Cs | • | 1 | |||||||||||
| 35 | Average HYD around C-2 | • | 1 | |||||||||||
| 36 | Cysteine location-1 | • | 1 | |||||||||||
| 37 | Cysteine location-5 | • | 1 | |||||||||||
| 38 | Cysteine odd-even index | • | 1 | |||||||||||
| 39 | Protein length | • | 1 | |||||||||||
| 40 | Bottleneck for PI | • | 1 | |||||||||||
| 41 | CC (closeness centrality) for PI | • | 1 | |||||||||||
| 42 | MNC for PI | • | 1 | |||||||||||
| 43 | B.C. related to all F.I. | • | 1 |
Abbreviations: C9, CMIM09; m13, mRMR13; TOT, total; DSS, double screening scheme; F.I., integrated functional interaction; A.I., all interactions. PI, physical interaction; HYD, hydrophobicity; A.A., amino acid; A … Y, amino acid abbreviation.