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. Author manuscript; available in PMC: 2014 Nov 1.
Published in final edited form as: Osteoarthritis Cartilage. 2013 Aug 14;21(11):1766–1773. doi: 10.1016/j.joca.2013.08.010

Table 1. Primers used for qRT-PCR.

Forward (Fwd) and reverse (Rev) primers used to determine changes in gene expression by qRT-PCR. GenBank accession numbers for the transcript variants recognized by primer pairs are indicated.

Gene Strand Primer Sequence GenBank Accession Number
Acan Fwd 5′-ATGGTCCTTCTATGACATACACTCCCCG-3′ NM_007424
Rev 5′-TTGTTACAGCGCCACCAAGG-3′
Adamts4 Fwd 5′-GATGTGTGCAAGCTTACCT-3′ NM_172845
Rev 5′-CATCCGTAACCTTTGGAGA-3′
Col2a1 Fwd 5′-GACCCAAACACTTTCCAACCGCAGT-3′ NM_031163; NM_003396
Rev 5′-TCATCAGGTCAGGTCAGCCATT-3′
Col10a1 Fwd 5′-CAGGCTTTCTGGGATGCCGCTTGT-3′ NM_009925
Rev 5′-GGGCACCTACTGCTGGGTAA-3′
Hes1 Fwd 5′-ACCAAAGACGGCCTCTGAGCACAGAAAGT-3′ NM_008235
Rev 5′-ATTCTTGCCCTTCGCCTCTT-3′
Hey1 Fwd 5′-ATCTCAACAACTACGCATCCCAGC-3′ NM_010423
Rev 5′-GTGTGGGTGATGTCCGAAGG-3′
Hey2 Fwd 5′-AGCGAGAACAATTACCCTGGGCAC-3′ NM_013904
Rev 5′-GAGGTAGTTGTCGGTGAATTGG-3′
HeyL Fwd 5′-CAGTAGCCTTTCTGAATTGCGAC-3′ NM_013905
Rev 5′-GCTTGGAGGAGCCCTGTTTCT-3′
Il6 Fwd 5′-CGGCCTTCCCTACTTCACAAGTCCG-3′ NM_031168
Rev 5′-CAGGTCTGTTGGGAGTGGTATCC-3′
Mmp13 Fwd 5′-GGAAGACCTTGTGTTTGCAGAGC-3′ NM_008607
Rev 5′-CACTGTAGACTTCTTCAGGATTCCCG-3′
Prg4 Fwd 5′-CGCCTTTTCCAAAGATCAATACTA-3′ NM_021400; NM_001110146
Rev 5′-GTGGTAATTGCTCTTGCTGTT-3′
Rpl38 Fwd 5′-AGAACAAGGATAATGTGAAGTTCAAGGTTC-3′ NM_001048057; NM_001048058; NM_023372
Rev 5′-CTGCTTCAGCTTCTCTGCCTTT-3′
Sox9 Fwd 5′-CCTACTACAGTCACGCAGCCG-3′ NM_011448
Rev 5′-GGGTTCATGTAAGTGAAGGTGGA-3′