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. 2013 Oct 15;8(10):e77573. doi: 10.1371/journal.pone.0077573

Table 1. Microsatellite loci assembled in two multiplex PCR sets, and used to genotype Tetranychus urticae mites (details on microsatellite isolation and characterization are described in [35,36], see Information S2).

Locus Core repeat Size of cloned allele (bp) Size range (bp) Fluorescent label Primer (µM) Primer sequence (5'-3')
PCR multiplex set 1 (Annealing temperature: 58°C)
TuCA72 (GT)6 262 264-270 VIC 0.02 F: ACTGTCTGGCGTCTTTTGTC
R: GTTTACCAGTTTCCCTTTGACC
TuCT37 (TC)7C(TC)5 128 121-127 VIC 0.02 F: GTAATAATGGGTGTTGTTGC
R: CGCAAAATATGAGTGAGAATG
Tu11 (GT)29 154 148-168 PET 0.02 F: CGTGTACAATCAGTCAACATCC
R: TGGACTTTTTAACCGTGGCT
Tu27 (GA)9 66 57-84 PET 0.02 F: TCAAACTTGCTTTTTTCAC
R: GTGATGAAAATGGAGATGG
TuCA12 (CA)7 276 263-275 FAM 0.02 F: GATTTGTGGTCGTGGTTTTC
R: GATCAACTCAAAAGGATAACGTTG
TuCT09 (CT)15 129 102-128 FAM 0.02 F: GATCACTTTTTCATGTTATTCTG
R: CTTGGAATGAACTTTAGCAC
TuCA25 (TC)13 164 155-165 FAM 0.02 F: AATGTGTTGGTTGTTTACGAAGTG
R: TTGGTCAAAGCCGGTTACAG
TuCT13 (TC)7 164 163-168 NED 0.02 F: CAGATGGATTTGCTTTCCAC
R: GATCCTAATCAACATGAGGGTC
TuCT81 (TC)9 346 345-350 NED 0.02 F: GATTCGTGAAGCCGATATTGA
R: GTCATCATCGTTACAAATTCTG
TuCT67 (CT)9 95 95-107 NED 0.02 F: CCATCATCTTCATCATTCTTCACC
R: TAGAACAGTCAAGCAAAAAGAGTC
PCR multiplex set 2 (Annealing temperature: 52°C)
TuCT73 (CA)7 111 111-113 VIC 0.02 F: CGATGTGGGTGGTAAGCATG
R: ACGATGATATTGATGATGAGCG
TuCA83 (GT)6 205 206-208 VIC 0.02 F: CAGGGTGAAACTTAGATACC
R: CAATTTTCCCTCTACATCTC
Tu16 (GAT)7 136 130-148 PET 0.02 F: TTCCAATGGAAAGTGGATTTG
R: TCAATACCAAACGAAACTGGC
Tu1 (GT)30 152 144-182 PET 0.02 F: GATGTAAAGGAGCGCAAAGG
R: CATTGTTTGTCGATTTCCTCTC
TuCT17 (GA)17 318 288-320 NED 0.02 F: GTGATTGTTTGGCGTGCTTAG
R: CATTGACCAGAGCGACATTG
TuCT26 (GA)8 154 150-156 NED 0.02 F: CGATGGAGCCGTTTCAAGAG
R: TCGTCATCATTGCCGTCATTTTAC
Tu35b (TGA)8 108 99-120 NED 0.02 F: AATGGAATGAGTTATCGTTGGG
R: CTTCCCGAAGGCTGTTGATA
TuCT18 (CT)9 296 294-296 FAM 0.02 F: CTTGATGCTAGTGATACAACG
R: CAAGGTGATGATTTGATTTAAAG
TuCT04 (CT)8 149 146-152 FAM 0.02 F: CGTCATCATTGCCGTCATTTTAC
R: GGAGCCGTTTCAAGAGAGTG
TuCA96 (TG)7 111 107-109 FAM 0.02 F: ATGGATTGTCACCGATTTCA
R: CTGAAGTTTACTTGCTATAGTC