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. 2013 Oct 17;8(10):e76546. doi: 10.1371/journal.pone.0076546

Table 2. Monoclonal expansions dominate the islet-infiltrating CD4+CD44high T cell repertoire at diabetes onset1.

Mouse2 TRBV gene TRBJ gene CDR3 sequence3 CDR3 Length4 Frequency5
8 15 2-1 SPGAEQFF 27 41.4
1 1-1 SADNRVDTEVFF 39 17.1
10 19 1-3 STGTARSGNLYF 42 68.7
1 2-5 SAGGQGLDTQYF 39 22.0
11 1 2-2 SASGQNTGQLYF 39 34.8
13-3 1-2 SDPGGSDYTF 33 22.6
12 1 1-1 SAAQNTEVFF 33 53.7
16 2-5 SFRDRKDTQYF 36 26.0
14 19 2-5 SAGTGGRQDTQYF 42 22.9
19 2-5 RPWGNQDTQYF 36 15.9
15 13-3 1-6 SDRGTNSLYF 36 41.5
16 16 2-1 SLVGGNYAEQFF 39 35.6
17 2-5 SREGVNQDTQYF 39 24.3
19 2-2 SIWGGNTGQLYF 39 16.5
1

Monoclonal expansions are defined as clonotypes representing >15% of total CDR3β sequences.

2

Numbers correspond to the diabetic mice identified in Table 1. Only the seven mice having monoclonal expansions are shown.

3

Amino acid sequences between the conserved cysteine and phenylalanine residues, as defined by IMGT [57].

4

CDR3 length of nucleotides.

5

Raw frequency of each clonotype within the total CDR3β sequences obtained from each mouse.