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. 2013 Aug 31;288(42):30181–30191. doi: 10.1074/jbc.M113.501585

TABLE 2.

Distances between residues of PLB and SERCA determined by cross-linking (X-link) versus x-ray diffraction (crystal)

Cross-linking distances between residues of PLB and SERCA were determined after co-expression of selected mutants of PLB with SERCA2a (5, 79) or SERCA1a (6) in microsomal membranes, or with native PLB and SERCA2a in human cardiac SR vesicles (16). Cross-linking was conducted with homo- or heterobifunctional cross-linking reagents (5, 79, 16) or with copper phenanthrolene (6). The distances in the PLB4/SERCA crystal structure were determined by measuring from the β-carbon of the PLB residue to the closest side chain atom of the corresponding SERCA residue (native protein). For V49G in PLB4 the distance was measured from the α-carbon of Gly49.

PLB SERCA Distance (Å)
Ref.
X-link Crystal
N27C Lys328 9–14 14 7
Lys27 Lys328 8 10–13a 16
N30C Cys318 10 10 5
N30C Lys328 14–16 17 7
L31C T317C 10 10 8
V49C V89C 0–5 5 6, 9
M50C V89C 10 NDb 9
L52C V89C 5 ND 9

a The distance measurement between Lys27 and Lys328 was estimated by computational mutation of Ala27 to Lys and selecting side chain rotomers compatible with the local structure for both Lys27 and Lys328, then measuring the closest approaches for the side chains.

b ND, not determinable.