Table 1.
Comparison of the Genomes of the C57BL/6N-TyrcWTSI Founders and 18 Laboratory Mouse Strains
| Total number of C57BL/6N-TyrcWTSI calls against the reference genomea | Total number of C57BL/6N-TyrcWTSI calls shared with C57BL6/NJb | Total number of C57BL/6N-TyrcWTSI calls not found in the mouse genomes strains or FVB/NJ | |
|---|---|---|---|
| SNVs Hom | 10,897 | 10,261 | 549 |
| Indels Hom | 16,200 | 14,073 | 646 |
| SNVs Het | 36,497 | 31,623 | 3,965 |
| Indels Het | 64,323 | 31,132 | 6,309 |
a
Includes only sites where SNV or indel positions were found in both C57BL/6N-TyrcWTSI sequenced founder mice.
b
Includes SNPs or indels in C57BL6/NJ from the mouse genomes project release9 and calls from C57BL6/NJ resequenced with 100bp Illumina paired end reads; indels were compared within a 25bp window.