Table 7.
The factors with higher ranking in proximal sequences
| ID | Name | Pattern | Rank |
|
|---|---|---|---|---|
| Significant | Enrichment | |||
| M00469 | AP-2alpha | GCCNNNRGS | 1 | 2 |
| M00470 | AP-2gamma | GCCYNNGGS | 2 | 4 |
| M00740 | Rb:E2F-1:DP-1 | TTTSGCGC | 3 | 1 |
| M00938 | E2F-1 | TTGGCGCGRAANNGNM | 4 | 3 |
| M00177 | CREB | NSTGACGTAANN | 5 | 5 |
| M00189 | AP-2 | MKCCCSCNGGCG | 6 | 8 |
| M00121 | USF | NNRYCACGTGRYNN | 7 | 6 |
| M00516 | E2F | TTTSGCGCGMNR | 8 | 7 |
| M00113 | CREB | NNGNTGACGTNN | 9 | 9 |
| M00695 | ETF | GVGGMGG | 10 | 13 |
The table shows the top ranked factors from the proximal promoters and those that have congruent ranks in both scoring schemes (enrichment score and the z-score of co-occurrence of TFBS with MyoD). The factors in the table are sorted in ascending order of the scores. The factors are selected based on top rank (above 100) and the differences between the ranks of the scoring schemes by 10 or less.