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. 2013 Aug 19;29(21):2797–2798. doi: 10.1093/bioinformatics/btt485

Table 1.

Positions of iBMQ-detected trans-eQTL hotspots containing Inline graphic50 genes, and comparisons with corresponding hotspots detected by the univariate R/QTL method

SNP GO term iBMQ
 R/QTL
#GO/Total P-val #GO/Total P-val
1@94.8 0012505 14/173 2.4e-4 5/27 4.0e-3
12@103.5 0007167 5/53 1.5e-3 3/24 6.9e-3
17@72.4 0006955 26/192 2.7e-13 6/49 2.5e-3
0017076 40/192 3.3e-7 10/49 0.015

Note: In the first column, a position identified as 1@94.8 refers to a SNP at position 94.8 Mb on chromosome 1. Columns list the GO term ID, and for each method, the number of trans-eQTL genes belonging to the GO term category, the total number of genes in the hotspot and the enrichment P-value (see Supplementary Material for details).