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. Author manuscript; available in PMC: 2013 Oct 19.
Published in final edited form as: Biochemistry. 2012 Mar 14;51(12):2453–2460. doi: 10.1021/bi300169x

Figure 7.

Figure 7

Input and output structures from Rosetta docking. A, LmP prepacked input structure is colored purple. The lowest RMSD output of LmCytc is orange. Rosetta optimized ionic interactions, such as Asp216 and Lys83 (inset). The large cyan sphere is a potassium ion bound in LmP which is not present in yeast CCP. B, CCP and Cytc co-crystal coordinates (PDB: 2PCC); the input structure is colored blue. The lowest RMSD output of cytc is orange. Lys79 is shifted to more favorably interact with CCP.