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. 2013 Sep 16;110(42):16784–16789. doi: 10.1073/pnas.1311948110

Table 2.

Predicted values of amide and hydrocarbon ΔASA for U → TS, TS → F, and U → F; comparison with structural values for U → F

Protein PDB ID code Predicted U → TS ΔASA
Predicted TS → F ΔASA
Predicted U → F ΔASA
U → F ΔASA from structure*
Hydrocarbon, Å2 Amide, Å2 Hydrocarbon, Å2 Amide, Å2 Hydrocarbon, Å2 Amide, Å2 Hydrocarbon, Å2 Amide, Å2
NTL9 1CQU (51) −1,282 ± 339 −471 ± 86 −958 ± 335 −328 ± 61 −2,241 ± 485 −799 ± 128 −2,726 −729
Bc-Csp 1C9O (52) −1,800 ± 122 −801 ± 106 −908 ± 45 −133 ± 27 −2,708 ± 154 −934 ± 129 −3,436 −1213
Bs-Csp 1NMG (53) −2,292 ± 238 −923 ± 238 −207 ± 266 −2 ± 71 −2,499 ± 358 −926 ± 256 −3,425 −1,054
FynSH3 1NYF (54) −1,534 ± 94 −577 ± 75 −1,362 ± 66 −306 ± 48 −2,905 ± 152 −883 ± 122 −2,726 −691
434 Cro 2CRO (55) −2,673 ± 469 −1,278 ± 333 −840 ± 506 −113 ± 147 −3,514 ± 698 −1,391 ± 400 −3,705 −1,106
PLB1 1HZ6 (56) −1,231 ± 115 −703 ± 84 −686 ± 101 −308 ± 39 −1,916 ± 180 −1,011 ± 122 −3,259 −1,220
CI2 2CI2 (57) −1,672 ± 95 −562 ± 75 −1,575 ± 93 −397 ± 59 −3,248 ± 174 −959 ± 134 −3,259 −834
HPr 1POH (58) −2,629 ± 186 −890 ± 125 −2,370 ± 346 −542 ± 88 −4,999 ± 428 −1,431 ± 207 −4,656 −1,525
ACP 1APS (59) −2,472 ± 256 −1,647 ± 344 −2,638 ± 166 94 ± 174 −5,110 ± 326 −1,554 ± 439 −5,391 −1,652
ACP-1 2VH7 (60) −2,647 ± 346 −2,215 ± 455 −2,786 ± 266 −409 ± 207 −5,434 ± 491 −2,624 ± 608 −5,765 −1,818
RPS6 1RIS (61) −3,026 ± 315 −909 ± 127 −3,065 ± 431 −494 ± 96 −6,091 ± 564 −1,402 ± 219 −5,796 −1,561
FKBP 1FKD (62) −2,760 ± 271 −1,916 ± 396 −3,243 ± 253 −447 ± 242 −6,003 ± 437 −2,364 ± 588 −6,529 −1,295
T4L 1B6I (63) −5,534 ± 570 −1,796 ± 255 −1,841 ± 189 −542 ± 79 −7,375 ± 643 −2,338 ± 328 −9,806 −2,606
*

ΔASA calculated for an extended model of the denatured state.

ΔASA values from Guinn et al. (6).