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. 2013 Oct 9;54(10):6612–6619. doi: 10.1167/iovs.13-12861

Figure 1.

Figure 1

Schematic representation of the method used to quantify the fibril density from TEM images with ImageJ software. (A) The original TEM image with random 0.5 μm × 0.5 μm area selected (white box); (B) selected area magnified; (C) magnified image converted to a binary black/white image; (D) collagen fibrils identified by edge detection method (blue spots); (E) outlines of each detected area; (F) fitted ellipses to detected area; and (G) final highlighted ellipses showing the collagen fibrils. The fibril density was then calculated by counting the fibrils within the selected area.