Table 2.
List of single nucleotide polymorphisms studied
| Number | Usual and full names | Accession Number | Reference |
|---|---|---|---|
| 1 | ATPase H+ C. gigas ATPase H+ transporting lysosomal protein gene, partial cds | EF694094 | Sauvage et al. (2007) |
| 2 | Glutaryl-CoA dehydrogenase–like protein C. gigas glutaryl-CoA dehydrogenase–like protein gene, partial cds | EF694089 | Sauvage et al. (2007) |
| 3 | Amylase gene B C. gigas alpha amylase (amy) gene, amy-B1 allele, partial cds | EF682217 | Sauvage et al. (2007) |
| 4 | Gonadal Transforming Growth factor (ogTGFb) cDN21 Crassostrea gigas cDNA clone cDN21P0003A17 5-, mRNA sequence | AM856765 | Fleury et al. (2009) |
| 5 | NADH dehydrogenase 6 EST016 CgG2RSMorest C. gigas cDNA clone HA26 similar to NADH dehydrogenase 6, mRNA sequence | CK172316 | Huvet et al. (2004a) |
| 6 | Glucose 6 phosphatase C. gigas glucose-6-phosphatase gene, partial cds | EF694098 | Sauvage et al. (2007) |
| 7 | Glycogen synthase C. gigas glycogen synthase gene, partial sequence | EF694079 | Sauvage et al. (2007) |
| 8 | HA114_1 C. gigas clone HA114 genomic sequence | EF694082 | Sauvage et al. (2007) |
| 9 | Ik cytokine-down regulator of HLA_2 C. gigas IK cytokine gene, partial cds | EF999946 | Sauvage et al. (2007) |
| 10 | Laccase_1 C. gigas laccase gene, partial cds | EF999948 | Sauvage et al. (2007) |
| 11 | Notch C. gigas notch3-like protein gene, partial cds | EF999949 | Sauvage et al. (2007) |
| 12 | Superoxide dismutase C. gigas superoxide dismutase gene, partial cds | EF694097 | Sauvage et al. (2007) |
| 13 | RNA helicase C. gigas partial mRNA for RNA helicase | AJ557014 | A. Herpin (unpublished) |
| 14 | Amylase gene A C. gigas alpha amylase (amy) gene, amy-A1 allele, partial cds | EF694074 | Sauvage et al. (2007) |
| 15 | Astacin C. gigas astacin metalloprotease gene, partial cds | EF694085 | Sauvage et al. (2007) |
| 16 | Ferritin GF2 C. gigas ferritin GF2 (GF2) mRNA, complete cds | AY321300 | Gueguen et al. (2003) |
| 17 | Bcl-2C. gigas predicted Bcl-2 protein mRNA | EU678310 | Renault et al. (2011) |
| 18 | BQ426586 C. gigas Hemocytes Lambda Zap Express Library Crassostrea gigas cDNA, mRNA sequence | BQ426586 | Gueguen et al. (2003) |
| 19 | BQ427367 C. gigas putative immune protein gene, partial cds | EF694095 | Sauvage et al. (2007) |
| 20 | Calcium dependant protein kinase C. gigas calcium-dependent protein kinase-like gene, partial sequence | EF694100 | Sauvage et al. (2007) |
| 21 | Glutathione S-transferase C. gigas glutathione S-transferase sigma class gene, partial cds | EF694090 | Sauvage et al. (2007) |
| 22 | Drac 3 C. gigas Drac3-like protein gene, partial cds | EF694083 | Sauvage et al. (2007) |
| 23 | Flavin-containing mono oxygenase 2 C. gigas mRNA for flavin-containing monooxygenase 2 (fmo-2 gene) | AJ585074 | Boutet et al. (2004) |
| 24 | BQ426639 C. gigas Hemocytes Lambda Zap Express Library Crassostrea gigas cDNA, mRNA sequence | BQ426639 | Gueguen et al. (2003) |
| 25 | Glycoprotein hormone receptor C. gigas glycoprotein hormone receptor gene, partial cds | EF694088 | Sauvage et al. (2007) |
| 26 | HA114_2 C. gigas clone HA114 genomic sequence | EF694082 | Sauvage et al. (2007) |
| 27 | Ik cytokine-down regulator of HLA_1 C. gigas IK cytokine gene, partial cds | EF999946 | Sauvage et al. (2007) |
| 28 | Laccase_2 C. gigas laccase gene, partial cds | EF999948 | Sauvage et al. (2007) |
| 29 | Sodium/glucose cotransporter_2 C. gigas sodium/glucose cotransporter mRNA, complete cds | AY551098 | Huvet et al. (2004a) |
| 30 | Tubulin C. gigas tubulin gene, partial cds | EF694087 | Sauvage et al. (2007) |
Outlier loci are indicated in bold.