Table 3. Novel miRNAs in D. latiflorus.
| Name | Novel mature miRNA |
Precursor |
|||||
|---|---|---|---|---|---|---|---|
| Sequence | Read count | Length (nt) | Precursor ID | Position | Stand | MFE (kcal/mol) | |
| dla-miRC1 | ucuugaccuuguaagacccaa | 4801 | 21 | PH01001979 | 131613.131676 | - | -22.8 |
| dla-miRC2-1 | ccaaccguugggcgacugcau | 786 | 21 | PH01004130 | 67055.67115 | - | -34.8 |
| dla-miRC2-2 | ccaaccguugggcgacugcau | 786 | 21 | PH01002446 | 47333.47393 | - | -38.8 |
| dla-miRC2-3 | ccaaccguugggcgacugcau | 786 | 21 | PH01005888 | 46451.46508 | + | -26 |
| dla-miRC2-4 | ccaaccguugggcgacugcau | 762 | 21 | PH01000353 | 108717.108774 | + | -31.3 |
| dla-miRC3 | uacucccgggaguagaaaagaggc | 654 | 24 | PH01002398 | 189512.189568 | + | -30.2 |
| dla-miRC4-1 | ugcuggagaagcagggcacgu | 640 | 21 | PH01000210 | 590922.591000 | - | -44.1 |
| dla-miRC4-2 | ugcuggagaagcagggcacgu | 640 | 21 | PH01000543 | 161249.161319 | + | -34.8 |
| dla-miRC5 | gggagagaggaggagagagaaga | 375 | 23 | PH01000541 | 78049.78131 | + | -25.1 |
| dla-miRC6 | gcuggcuauaggauagauaggaag | 312 | 24 | PH01243766 | 66.129 | - | -23.7 |
| dla-miRC7 | uggcccuguuuggaaugcgggaau | 217 | 24 | PH01001115 | 391586.391670 | - | -32.3 |
| dla-miRC8 | gccaagaacguguaagagauggag | 210 | 24 | PH01030611 | 1103.1175 | - | -21.5 |
| dla-miRC9 | ggguggagcugugccaaacggggc | 207 | 24 | PH01000285 | 221024.221089 | - | -30 |
| dla-miRC10 | ccauaguagacgccucaucacaga | 163 | 24 | PH01004259 | 20814.20883 | - | -27.4 |
| dla-miRC11 | acaccugggaguagaaaaaaggcu | 150 | 24 | PH01000105 | 568774.568850 | + | -30.3 |
| dla-miRC12 | ccaaccauugggcgacugcau | 124 | 21 | PH01000070 | 852964.853021 | - | -36.8 |
| dla-miRC13 | uuuggaacauaggaauuuca | 119 | 20 | PH01006954 | 13751.13847 | + | -23.4 |
| dla-miRC14 | gauacuagaauaucacagacgguu | 97 | 24 | PH01001207 | 363449.363523 | + | -38.4 |
| dla-miRC15 | aggaagagagagaaggaagcg | 90 | 21 | PH01002001 | 139567.139635 | - | -27.4 |
| dla-miRC16 | gguggagcugugccaaacagg | 63 | 21 | PH01003096 | 129017.129079 | + | -34.7 |
| dla-miRC17-1 | agguagagcugugccaaacgg | 61 | 21 | PH01003063 | 37258.37318 | + | -30.1 |
| dla-miRC17-2 | agguagagcugugccaaacgg | 61 | 21 | PH01001111 | 96856.96916 | - | -26.4 |
| dla-miRC17-3 | agguagagcugugccaaacgg | 61 | 21 | PH01003063 | 37297.37377 | + | -26.5 |
| dla-miRC18 | cugguucgguccauguagaggugu | 59 | 24 | PH01003226 | 54563.54634 | + | -25.8 |
| dla-miRC19 | cuuggacugaccaagccacauggu | 55 | 24 | PH01001925 | 2237.2321 | - | -21.3 |
| dla-miRC20 | uucuagauaagaaccgucugugau | 46 | 24 | PH01000405 | 391719.391798 | + | -32.7 |
| dla-miRC21 | ggcccugacugcgucgaccucgg | 42 | 23 | PH01002012 | 253987.254051 | + | -20.3 |
| dla-miRC22 | cgcaggaaucgggaaaaauu | 40 | 20 | PH01002694 | 92485.92570 | - | -29.6 |
| dla-miRC23-1 | accuaggaccaagagggggaggga | 37 | 24 | PH01001705 | 131691.131777 | - | -30.1 |
| dla-miRC23-2 | accuaggaccaagagggggaggga | 37 | 24 | PH01001705 | 125497.125583 | - | -30.1 |
| dla-miRC24 | aacacagacggucucuaaaccaaa | 36 | 24 | PH01001117 | 152549.152626 | + | -29.5 |
| dla-miRC25-1 | guaugaagguuuguuggcuggcau | 34 | 24 | PH01003289 | 73533.73598 | - | -23.8 |
| dla-miRC25-2 | guaugaagguuuguuggcuggcau | 33 | 24 | PH01001281 | 374181.374246 | + | -22.6 |
| dla-miRC26 | gaggcaagugcaugguagaauagu | 32 | 24 | PH01001847 | 191714.191783 | - | -24.6 |
| dla-miRC27-5p | gucaucauagccacaaaagaucgu | 31 | 24 | PH01001060 | 7263.7355 | + | -44.7 |
| dla-miRC27-3p | gaucuucuguggcuaugaugacau | 22 | 24 | PH01001060 | 7263.7355 | + | -44.7 |
| dla-miRC28-1 | cacagacgguuguaauuag | 31 | 19 | PH01002875 | 30884.30954 | + | -46.1 |
| dla-miRC28-2 | cacagacgguuguaauuag | 31 | 19 | PH01001151 | 55189.55261 | + | -39.2 |
| dla-miRC29 | acuagagcugugccaaacgg | 31 | 20 | PH01000462 | 484606.484666 | + | -28.6 |
| dla-miRC30-5p | gacuauguggucguaaaag | 31 | 19 | PH01003863 | 85885.85952 | - | -21.3 |
| dla-miRC30-3p | gacuacauggucguagaag | 7 | 19 | PH01003863 | 85885.85952 | - | -21.3 |
| dla-miRC31 | uucuuaucuagaaccgucugugau | 28 | 24 | PH01000334 | 424366.424425 | + | -21.8 |
| dla-miRC32 | uguguagauuaucacagacgguu | 28 | 23 | PH01001216 | 399131.399203 | + | -26.6 |
| dla-miRC33 | gaggaggaggagcagccagcu | 27 | 21 | PH01002565 | 134432.134516 | - | -43.1 |
| dla-miRC34 | ugagguggucguaggaaag | 25 | 19 | PH01000062 | 595060.595120 | - | -27.5 |
| dla-miRC35 | guuggaggagagagaagaga | 24 | 20 | PH01000059 | 1124542.1124604 | + | -28.2 |
| dla-miRC36 | gacuaugugaucguagaag | 23 | 19 | PH01004933 | 41409.41498 | - | -39.7 |
| dla-miRC37 | cugccaaacaggcccuua | 23 | 18 | PH01000905 | 736.808 | - | -28.3 |
| dla-miRC38-1-5p | uugcccaaugguuggacgacu | 22 | 21 | PH01003262 | 22388.22461 | - | -38.9 |
| dla-miRC38-1-3p | cgcuccaccguucggcgacu | 5 | 20 | PH01003262 | 22388.22461 | - | -38.9 |
| dla-miRC38-2 | uugcccaaugguuggacgacu | 22 | 21 | PH01000012 | 523648.523728 | + | -37.2 |
| dla-miRC39 | guaagggucuguuuggaag | 20 | 19 | PH01001784 | 229612.229696 | + | -30.1 |
| dla-miRC40 | gaggagauggggaaagug | 20 | 18 | PH01000623 | 330358.330443 | + | -28.2 |
| dla-miRC41-1 | acggcacggcacgacggaaugacc | 19 | 24 | PH01001751 | 7934.8008 | + | -35.9 |
| dla-miRC41-2 | acggcacggcacgacggaaugacc | 19 | 24 | PH01001751 | 7880.7958 | + | -33.6 |
| dla-miRC42 | ccuaagggucuguuugggac | 19 | 20 | PH01195637 | 413.496 | + | -31 |
| dla-miRC43 | caucuauagacgguacuaaagacg | 18 | 24 | PH01002139 | 217146.217207 | - | -22.1 |
| dla-miRC44-1 | gacuacguggucguaaaag | 17 | 19 | PH01001033 | 54852.54919 | + | -34.8 |
| dla-miRC44-2-5p | gacuacguggucguaaaag | 17 | 19 | PH01004351 | 50225.50292 | + | -28.3 |
| dla-miRC44-2-3p | gacuacguggucguagaag | 10 | 19 | PH01004351 | 50225.50292 | + | -28.3 |
| dla-miRC44-3 | gacuacguggucguaaaag | 17 | 19 | PH01000978 | 326474.326539 | + | -23.3 |
| dla-miRC45 | ccaaugguugggcgacag | 16 | 18 | PH01000015 | 1202809.1202885 | + | -39.9 |
| dla-miRC46 | uaggccuaaugccacgucucc | 15 | 21 | PH01002414 | 37289.37354 | - | -25.4 |
| dla-miRC47 | uuuagggucuguuugggau | 15 | 19 | PH01000528 | 120129.120212 | - | -25.3 |
| dla-miRC48 | guugaaggugcuaagggaaaggac | 14 | 24 | PH01000301 | 746041.746129 | + | -26.4 |
| dla-miRC49 | ugggauuaucacagacgguucuu | 13 | 23 | PH01003822 | 73010.73079 | + | -30.8 |
| dla-miRC50 | guguaucagacgguucuugaugug | 13 | 24 | PH01004651 | 31471.31527 | + | -30.5 |
| dla-miRC51 | guggaacuggagcuggug | 12 | 18 | PH01000859 | 1107.1183 | + | -32.4 |
| dla-miRC52 | gauaucuguagauagaguaggagc | 11 | 24 | PH01000166 | 633213.633296 | + | -22.3 |
| dla-miRC53 | gucguuucucaagugguggaccuc | 11 | 24 | PH01001097 | 143567.143631 | + | -21.2 |
| dla-miRC54 | cacugacacgugggcuaag | 10 | 19 | PH01000466 | 170309.170382 | + | -32.8 |
| dla-miRC55 | ucuugaucguugauuucag | 10 | 19 | PH01000693 | 345374.345449 | + | -33.9 |
| dla-miRC56 | gugauaauuguaacacugacgguu | 9 | 24 | PH01001963 | 79707.79782 | + | -35.1 |
| dla-miRC57-5p | guccaaccguuggaugacuuggca | 8 | 24 | PH01001235 | 7375.7464 | + | -40.9 |
| dla-miRC57-3p | ccaacgguugagcgacua | 6 | 18 | PH01001235 | 7375.7464 | + | -40.9 |
| dla-miRC58 | uuaagggucuguuugggau | 8 | 19 | PH01000345 | 528117.528198 | + | -41.9 |
| dla-miRC59-1 | guucaaccguuggacgauua | 7 | 20 | PH01003601 | 133072.133149 | - | -37.6 |
| dla-miRC59-2 | guucaaccguuggacgauua | 7 | 20 | PH01003390 | 64643.64719 | - | -33.5 |
| dla-miRC60 | gucuugugcaguggaccguggugu | 7 | 24 | PH01000115 | 379347.379411 | - | -24.9 |
| dla-miRC61 | guacuguuggcucagcccaggcac | 6 | 24 | PH01000878 | 437404.437477 | + | -39.9 |
| dla-miRC62 | agugaaugaugcgggagacu | 4 | 20 | PH01000130 | 143043.143121 | - | -37.8 |