Table 1.
Clone_selection | Non-synonimous Coding |
Ori | Downstream of ori |
|||
---|---|---|---|---|---|---|
1_MMS | G50D G64D | T113C | G189A | C409T | ||
2_MMS | H144R | T202A | T589C | G646T | C754T | |
3_MMS | H144Y | C238T | C643T | |||
4_MMS | A53T P55L | T170C | G325A | T479A | G755A | |
5_MMS | P27L P207S | G512A | ||||
6_MMS | H51L T121N | C328T | G592A | T840C | ||
1_MNNG | A78V L138I R193S D201G P207L S237C | G338A | ||||
2_MNNG | P180L | G53A | G95T | G373A | ||
3_MNNG | A97T | G53A | C198T | G477A | T687A | |
4_MNNG | H144Y N231D | G180A | ||||
5_MNNG | R58W A219D_P229L K255E | G44A | C116T | G180A | T666A, C667T | G850A |
6_MNNG | R58W A118T | G258A | A696G | |||
Total mutations | 26 (22 new) | 25 | 9 | |||
Expected without selection | 10 | 1.1 | 5.1 | |||
Enrichment through positive selection (fold) | 2.2 (footnote 2) | 23 (footnote 2) | 1.8 (footnote 3) | |||
MMS | 10 | 13 | 4 | |||
Expected without selection | 5 | 0.55 | 2.55 | |||
Enrichment through positive selection (fold) | 2.0 | 23 | 1.6 | |||
MNNG | 16 (12 new) | 12 | 5 | |||
Expected without selection | 5 | 0.55 | 2.55 | |||
Enrichment through positive selection (fold) | 3.2 (2.4 new) | 22 | 2.0 |
Footnote 1:
Total bases: 795 × 12= 9546;
Expected frequency of bp substitutions (without selection) ~1.5/kb × 9.55kb =14
Expected frequency of amino acid substitutions (~30% synonymous (23)) ~ 10
Mutations present before randomization are underlined
Footnote 2
Total bases: 613 × 12= 7356;
Expected frequency of base-pair substitutions (without selection) ~0.15/kb ×7.36kb=1.1
Footnote 3:
Total bases: 280 × 12 =3360
Expected frequency of base-pair substitutions (without selection) ~1.5/kb × 3.4 kb= 5.1
For MMS and MNNG selections, comprising 6 and 6 clones respectively, each of the expected values calculated for the total needs to be divided by half.