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. Author manuscript; available in PMC: 2013 Oct 22.
Published in final edited form as: Methods Mol Biol. 2012;834:33–48. doi: 10.1007/978-1-61779-483-4_3

Table 1.

Sequence of ALKBH2 clones identified following methylating agent selection

Clone_selection Non-synonimous
Coding
Ori Downstream of
ori
1_MMS G50D G64D T113C G189A C409T
2_MMS H144R T202A T589C G646T C754T
3_MMS H144Y C238T C643T
4_MMS A53T P55L T170C G325A T479A G755A
5_MMS P27L P207S G512A
6_MMS H51L T121N C328T G592A T840C
1_MNNG A78V L138I R193S D201G P207L S237C G338A
2_MNNG P180L G53A G95T G373A
3_MNNG A97T G53A C198T G477A T687A
4_MNNG H144Y N231D G180A
5_MNNG R58W A219D_P229L K255E G44A C116T G180A T666A, C667T G850A
6_MNNG R58W A118T G258A A696G
Total mutations 26 (22 new) 25 9
Expected without selection 10 1.1 5.1
Enrichment through positive selection (fold) 2.2 (footnote 2) 23 (footnote 2) 1.8 (footnote 3)
MMS 10 13 4
Expected without selection 5 0.55 2.55
Enrichment through positive selection (fold) 2.0 23 1.6
MNNG 16 (12 new) 12 5
Expected without selection 5 0.55 2.55
Enrichment through positive selection (fold) 3.2 (2.4 new) 22 2.0

Footnote 1:

Total bases: 795 × 12= 9546;

Expected frequency of bp substitutions (without selection) ~1.5/kb × 9.55kb =14

Expected frequency of amino acid substitutions (~30% synonymous (23)) ~ 10

Mutations present before randomization are underlined

Footnote 2

Total bases: 613 × 12= 7356;

Expected frequency of base-pair substitutions (without selection) ~0.15/kb ×7.36kb=1.1

Footnote 3:

Total bases: 280 × 12 =3360

Expected frequency of base-pair substitutions (without selection) ~1.5/kb × 3.4 kb= 5.1

For MMS and MNNG selections, comprising 6 and 6 clones respectively, each of the expected values calculated for the total needs to be divided by half.