Table 2.
Maker | Model | Nucleotide frequency | Γ | Rate matrix | p-inv | lnL HM |
---|---|---|---|---|---|---|
12S rRNA | TPM1uf + Γ | 0.380, 0.050, 0.117, 0.453 | 0.477 | 1.00, 5.29, 1.76, 1.76, 5.29, 1.00 | nr | -2158.86 |
16S rRNA | TVM + Γ | 0.409, 0.161, 0.080, 0.350 | 0.245 | 0.94, 4.25, 3.70, 0.83, 4.25, 1.00 | nr | -2622.66 |
28S rRNA | TPM2 + I | 0.250, 0.250, 0.250, 0.250 | nr | 2.50, 9.48, 2.50, 1.00, 9.48, 1.00 | 0.759 | -2001.79 |
COI | GTR + Γ + I | 0.341, 0.133, 0.104, 0.422 | 0.384 | 0.80, 6.38, 2.05, 0.92, 17.7, 1.00 | 0.416 | -7899.90 |
ITS2 | TPM1uf + Γ | 0.299, 0.180, 0.210, 0.312 | 0.411 | 1.00, 3.86, 1.64, 1.64, 3.86, 1.00 | nr | -1891.23 |
Total evidence | GTR + Γ + I | 0.313, 0.157, 0.171, 0.359 | 0.625 | 1.32, 6.07, 4.10, 1.02, 10.2, 1.00 | 0.535 | -17525.05 |
lnL HM = harmonic mean of the normal logarithm for the tree likelihood score;
nr = not relevant in the best-fit model.