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. 2013 Sep 30;2013:917342. doi: 10.1155/2013/917342

Table 2.

Candidate target genes for differentially expressed miRNAs obtained by the intersection of at least three programs.

miRNA name Target gene TG1 NS2
bta-miR-29b COL3A1,  FBN1,  COL11A1,  COL1A2,  IREB2,  TRIB2,  MYCN,  BLMH,  PPM1D, DNMT3A,  ISL1,  PDGFB,  ARVCF,  ZBTB40 14 7
bta-miR-29c TRAF4,  PMP22,  COL4A2,  DNAJB11,  CRISPLD1,  PDGFB,  FBN1,  BLMH, ISL1,  YY1,  PPM1D,  IREB2,  FOS,  MYCN,  RLF,  HMCN1,  HMGN3,  DNMT3A,  SGK 19 6
bta-miR-375 YBX1,  QKI,  ELAVL4,  ZFPM2,  HOXA3,  UBE3A,  PDE4D,  YAP1,  TSC22D2, TIMM8A,  EBF3,  PRKD1,  HABP2,  C13orf23 14 5
bta-miR-135a NR3C2,  CTTNBP2,  SP3,  VLDLR,  PTK2,  ARHGEF4,  ADCYAP1,  KCNMA1, BTBD10,  WAC,  NBEA,  INHBA,  TRPM7,  ELOVL6,  RAP2A,  USP15 16 6
bta-miR-22-5p BIN1,  WDR26,  SV2A,  SATB2,  BCL9,  MAT2A,  MAP3K12,  FNBP4,  FAM49B, BCL9L,  YARS,  RBM15,  WDFY3,  STAG2,  DNAJB5,  WDTC1,  SIRT1,  LRRC1 18 5
bta-miR-214 ZBTB20,  ARPC5L,  KPNA3,  ARVCF,  RAB14,  WDTC1,  ITCH,  KLC2,  RTN2 9 6
bta-miR-33a ABCA1,  KPNA4,  ZNF281,  SLC25A25,  YWHAH,  SATB2,  HADHB,  EEF1A1, CACNA1C,  CAMK2G,  ATP1B1 11 6
bta-miR-451 TTN,  OSR1,  PMM2,  C11orf30,  AEBP2,  SAMD4B,  TBX1,  FBXO33,  CDKN2D, YWHAZ,  YTHDF2,  CAB39,  ZNF644 13 3
bta-miR-190a NEUROD1,  WSB1,  TNRC6A,  NBEA,  HECA,  C20orf112 6 6
bta-miR-378 TOB2,  C11orf49,  SOX7,  DDAH1,  SULF1,  SRC,  DYRK1A,  DBT,  STAC2 9 3
bta-miR-423-5p SUFU,  NTN1,  STK24,  AP2A1,  DAB2IP,  MYBL2,  CAMTA2 7 3
bta-miR-7 SPATA2,  ARID4A,  GLI3,  SNCA,  KCNJ2,  KLF4,  WDR47,  PDE4D,  PFN2,  GATA6, PHF21A,  LEMD3,  PPARGC1A 13 6
bta-miR-99a HOXA1,  MBNL1,  MTMR3,  HS3ST2,  SMAD7,  HNRPU 6 5
bta-miR-185 ATP6V1F,  IKZF4,  SLC16A2,  CA10,  EPHB2,  PAK6,  DTX3,  NEUROD2,  CDC42, EIF2C1,  SF1,  PHYHIP,  CPEB2,  FAM53B,  PRX,  RAB14,  GATAD2B,  IGSF4C,  RAE1 19 5
bta-miR-1 FNDC3A,  E2F5,  KTN1,  DDX5,  CLTC,  EIF4E 6 7
bta-miR-125a GTPBP2,  RAPGEFL1,  ABHD3,  ATP1B4,  PPP1CA,  ACCN2 6 5
bta-miR-382 TOP1,  HSPA2,  EEF1A1,  RPE, SYNCRIP, CLTC 6 4
bta-miR-22-3p FAM49B, SIRT1,  DNAJB5,  RBM15,  BCL9L,  STAG2,  LRRC1,  FNBP4,  SATB2, BCL9,  MAP3K12,  SV2A,  WDFY3 13 6
bta-miR-660 DCBLD2,  SDC1,  DNAJA2 3 3
bta-miR-100 HS3ST2,  FGFR3,  SMARCA5,  EIF2C2,  FZD8,  TRIB2,  SMAD7,  MTMR3,  HOXA1, HNRPU 10 5
bta-miR-146a IRAK1,  STRBP,  NOVA1,  KLF7,  LRRC15,  USP3,  STC1,  CASK,  SH3GL2,  ROBO1, PHOX2B,  PPP1R11,  RUNX1T1,  ZFYVE1,  BCL11A,  CNTFR,  MYT1,  ELAVL1,  SYT1,
NRP2,  HIC2,  EIF5A2,  FBXL10,  KCTD15,  DLGAP1,  SLC25A14,  SPIB 		27 4
bta-miR-184 SF1,  SIDT2,  EIF2C2,  CREB3L1,  INPPL1,  RASL10B,  PRKCB1 7 4

1Total of genes that are selected as candidate target genes.

2The number of programs that can predict these candidate target genes.