Table 1. LncRNAs that showed increased binding to both Sin3A and coREST after focal ischemia.
All lncRNAs are confirmed to be the annotated non-coding transcripts from NCBI, ENSEMBL and UCSC genome browser. Δ fold over sham is mean fold chance (<20% S.D. in each case) in comparison with the sham group (n=3/group). Intragenica represents sense_exon overlap. RIP, RNA immunoprecipitation. NC, no change. Fos, FBJ osteosarcoma oncogene; Slc2a3, solute carrier family 2 (facilitated glucose transporter), member 3; Lgi3, leucine-rich repeat LGI family, member 3; Prpf4b, PRP4 pre-mRNA processing factor 4 homolog B (yeast).
| Δ fold over sham | |||||
|---|---|---|---|---|---|
| LncRNA | Expression | RIP Sin3A | RIP coREST | Location | Associated protein-coding gene |
| MRAK154943 | 12.91 | 3.42 | 2.56 | Intergenic | |
| XR_005513 | 14.50 | 2.81 | 2.25 | Intergenic | |
| MRAK159688 | 12.96 | 2.73 | 3.15 | Intragenica | Fos (NM_022197) |
| BC158675 | NC | 6.04 | 3.10 | Intergenic | |
| MRAK013532 | NC | 5.59 | 2.55 | Intergenic | |
| MRBC030402 | NC | 4.36 | 2.22 | Intergenic | |
| BC094214 | NC | 3.98 | 4.28 | Intergenic | |
| MRBC019134 | NC | 3.02 | 2.31 | Intergenic | |
| XR_007454 | NC | 2.73 | 2.15 | Intergenic | |
| MRBC052873 | NC | 2.14 | 2.55 | Intergenic | |
| XR_008939 | NC | 2.07 | 2.45 | Intergenic | |
| MRuc007jsx | NC | 2.00 | 2.18 | Intergenic | |
| BC063168 | NC | 3.14 | 2.93 | Intragenica | Slc2a3 (NM_017102) |
| BC158671 | NC | 2.48 | 2.10 | Intragenica | Lgi3 (NM_001107277) |
| MRAK047212 | NC | 2.43 | 2.22 | Intragenica | Prpf4b (NM_001011923) |