Table 2. Stroke-induced lncRNAs that showed increased binding to Sin3A, but not to coREST.
All lncRNAs are confirmed to be the annotated non-coding transcripts from NCBI, ENSEMBL and UCSC genome browser. Δ fold over sham is mean fold chance (<20% S.D. in each case) in comparison with the sham group (n=3/group). RIP, RNA immunoprecipitation. Intragenica represents sense_exon overlap and Intragenicb represents sense_intron overlap. Dclk1, doublecortin-like kinase 1; CDC91, cell division cycle 91-like 1; GFAP, glial fibrillary acidic protein.
| ΔFold over sham | ||||
|---|---|---|---|---|
| LncRNA | Expression | RIP | Location | Associated protein-coding gene |
| XR_008555 | 2.86 | 3.60 | Intergenic | |
| XR_007499 | 6.49 | 3.08 | Intergenic | |
| XR_007404 | 5.28 | 3.04 | Intergenic | |
| XR_006148 | 11.70 | 3.02 | Intergenic | |
| XR_007321 | 8.66 | 2.56 | Intergenic | |
| XR_005733 | 8.32 | 2.22 | Intergenic | |
| XR_007247 | 18.03 | 2.21 | Intergenic | |
| XR_009083 | 22.07 | 2.13 | Intergenic | |
| XR_009151 | 14.91 | 2.12 | Intergenic | |
| XR_005800 | 15.80 | 2.12 | Intergenic | |
| NR_027324 | 5.81 | 2.05 | Intergenic | |
| XR_006778 | 4.96 | 2.02 | Intergenic | |
| DQ266361 | 8.33 | 3.87 | Intergenic | |
| MRAK166199 | 3.70 | 3.60 | Intergenic | |
| XR_008295 | 7.93 | 2.88 | Itergenic | |
| XR_008876 | 6.66 | 2.62 | Intergenic | |
| MRAK049735 | 18.43 | 2.13 | Intergenic | |
| XR_007101 | 5.74 | 2.08 | Intergenic | |
| XR_007384 | 12.11 | 2.02 | Intergenic | |
| AF030089 | 3.85 | 2.90 | Intragenica | Dclk1 (NM_053343) |
| MRAK135044 | 3.74 | 2.83 | Intragenicb | Dclk1 (NM_053343) |
| AY383714 | 10.61 | 2.62 | Intragenica | CDC9111 (NM_181637) |
| EF094477 | 6.83 | 2.42 | Intragenica | GFAP (NM_017009) |