Table 2.
List of differentially expressed genes common to Rough lemon and Pineapple sweet orange
| Rough lemon |
Pineapple sweet orange |
||||
|---|---|---|---|---|---|
| Unigene ID | Annotation | M-value* | FDR (%)† | M-value* | FDR (%)† |
| CTF0607 | MADS-box protein PTM5 | –2·232 | 0 | –1·993 | 0 |
| CTF0899 | MYB transcription factor MYB84 | –1·120 | 0 | –0·891 | 0 |
| CTF0931 | SVP-like floral repressor | –2·807 | 0 | –0·568 | 0 |
| CTF0516 | MADS-box protein 2 | –1·305 | 4·9 | –1·650 | 0 |
| CTF0558 | APETALA1 | –0·648 | 5 | –1·037 | 0 |
| CTF0173 | MADS5 protein | –2·663 | 0 | –3·707 | 0 |
| CTF0316 | MADS-box protein 15 | –1·523 | 4·9 | –1·663 | 0 |
| CTF0397 | At3g49760 | –1·244 | 4·9 | –0·498 | 1·9 |
| CTF0515 | AtMYB2 | –0·377 | 4·9 | –1·038 | 0 |
| CTF0588 | Putative homeodomain protein | –0·348 | 4·9 | –0·278 | 2·87 |
| CTF0170 | Ethylene response factor 5 | 0·655 | 4·1 | 14·405 | 5·1 |
| CTF0723 | Pathogenesis-related transcription factor and ERF | 2·337 | 0 | 0·368 | 5·1 |
Genes highlighted in bold were upregulated in the juvenile phase; the other genes were overexpressed in the adult phase.
*The M-value is the base two logarithm of the ratio between the background-substracted foreground intensity measured in the red and the green channels.
†Negative values mean higher expression in adult samples and positive ones higher expression in juvenile samples. FDR is the false discovery rate estimated for each gene by SAM (Significance Analysis of Microarrays) as the percentage of genes falsely identified as differentially expressed.