Table 6.
Known and novel herpesviruses included in phylogenetic analysis
| Virus subfamily and name and/or strain | Virus abbreviation | Host species | Novel virus | Virus detected in this study | GenBank accession no. |
|---|---|---|---|---|---|
| Subfamily Betaherpesvirinae | |||||
| Human cytomegalovirus | Human | ||||
| strain Toledo | HCMV Toledo | GU937742 | |||
| strain AD169 | HCMV AD169 | X17403 | |||
| Chimpanzee cytomegalovirus | CCMV | Chimpanzee | + | NC_003521 | |
| Pan troglodytes cytomegalovirus 1 | PtroCMV1 | Western chimpanzee | + | FJ538485 | |
| Pan troglodytes cytomegalovirus 2 | PtroCMV2 | Western chimpanzee | + | FJ538487 | |
| Gorilla gorilla cytomegalovirus 1 | GgorCMV1 | Gorilla | FJ538492 | ||
| Gorilla gorilla cytomegalovirus 2 | GgorCMV2 | Gorilla | FJ538490 | ||
| Macaca fascicularis cytomegalovirus 1 | MfasCMV1 | Cynomolgus monkey | AY728171 | ||
| Mandrillus sphinx cytomegalovirus 1 | MsphCMV1 | Mandrill | AY129399 | ||
| Rhesus cytomegalovirus | RhCMV | Rhesus macaque | NC_006150 | ||
| Simian cytomegalovirus, strain Colburn | AGM-CMV | African green monkey | FJ483969 | ||
| Piliocolobus badius cytomegalovirus 1 | PbadCMV1 | Western red colobus | + | + | KF254800 |
| Piliocolobus badius cytomegalovirus 1b | PbadCMV1b | Western red colobus | + | + | KF254801 |
| Piliocolobus badius cytomegalovirus 2 | PbadCMV2 | Western red colobus | + | + | KF254799 |
| Piliocolobus badius cytomegalovirus 3 | PbadCMV3 | Western red colobus | + | KF318790 | |
| Colobus polykomos cytomegalovirus 1 | CpolCMV1 | Western black-and-white colobus | + | + | KF254796 |
| Colobus guereza cytomegalovirus 1.1 | CgueCMV1.1 | Guereza | AY129397 | ||
| Colobus guereza cytomegalovirus 1.2 | CgueCMV1.2 | Guereza | EU118147 | ||
| Subfamily Gammaherpesvirinae | |||||
| Epstein-Barr virus | EBV | Human | NC_007605 | ||
| Pan paniscus lymphocryptovirus 1 | PpanLCV1 | Bonobo | AF534220 | ||
| Pan troglodytes lymphocryptovirus 1 | PtroLCV1 | Western chimpanzee | + | AF534226 | |
| Gorilla gorilla lymphocryptovirus 1 | GgorLCV1 | Gorilla | AF534225 | ||
| Rhesus lymphocryptovirus | RhLCV | Rhesus macaque | NC_006146 | ||
| Piliocolobus badius lymphocryptovirus 1 | PbadLCV1 | Western red colobus | + | AF534228 | |
| Piliocolobus badius lymphocryptovirus 2 | PbadLCV2 | Western red colobus | GQ921927 | ||
| Colobus polykomos lymphocryptovirus 1 | CpolLCV1 | Western black-and-white colobus | + | GQ921923 | |
| Colobus guereza lymphocryptovirus 1 | CgueLCV1 | Guereza | AF534219 | ||
| Human herpesvirus 8 | HHV-8 | Human | NC_009333 | ||
| Pan troglodytes rhadinovirus 1 | PtroRHV1 | Western chimpanzee | + | AY138585 | |
| Pan troglodytes rhadinovirus 2 | PtroRHV2 | Western chimpanzee | + | EU085378 | |
| Pan troglodytes rhadinovirus 3 | PtroRHV3 | Western chimpanzee | GQ995451 | ||
| Gorilla gorilla rhadinovirus 1 | GgorRHV1 | Gorilla | AY177144 | ||
| Rhesus rhadinovirus | RRV | Rhesus monkey | NC_003401 | ||
| Retroperitoneal fibromatosis-associated herpesvirus | RFHV | Pig-tailed macaque | AF204166 | ||
| Piliocolobus badius rhadinovirus 1 | PbadRHV1 | Western red colobus | + | + | KF254798 |
| Colobus polykomos rhadinovirus 1 | CpolRHV1 | Western black-and-white colobus | + | + | KF254797 |